CGH-Plotter: MATLAB toolbox for CGH-data analysis (original) (raw)

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Received:

08 November 2002

Revision received:

14 February 2003

Published:

01 September 2003

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Reija Autio, Sampsa Hautaniemi, Päivikki Kauraniemi, Olli Yli-Harja, Jaakko Astola, Maija Wolf, Anne Kallioniemi, CGH-Plotter: MATLAB toolbox for CGH-data analysis, Bioinformatics, Volume 19, Issue 13, September 2003, Pages 1714–1715, https://doi.org/10.1093/bioinformatics/btg230
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Abstract

Summary: CGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using _k_-means clustering and dynamic programming. The application offers a convenient way to analyze CGH-data and can also be applied for the analysis of cDNA microarray expression data. CGH-Plotter toolbox is platform independent and requires MATLAB 6.1 or higher to operate.

Availability: http://sigwww.cs.tut.fi/TICSP/CGH-Plotter

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Author notes

1Institute of Signal Processing, Tampere University of Technology, PO Box 553, 33101 Tampere, Finland, 2Medical Biotechnology Group, VTT Technical Research Centre of Finland, PO Box 106, FIN-20521 Turku, Finland and 3Laboratory of Cancer Genetics, Institute of Medical Technology, University of Tampere and Tampere University Hospital FIN-33520 Tampere, Finland

© Oxford University Press 2003; all rights reserved.

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