Nucleotide sequences at the 5′-termini of the alfalfa mosaic virus RNAs and the intercistronic junction in RNA 3 (original) (raw)
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Department of Organic Chemistry, State University of Leiden
P.O. Box 9505, 2300 RA Leiden, The Netherlands
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Department of Organic Chemistry, State University of Leiden
P.O. Box 9505, 2300 RA Leiden, The Netherlands
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Received:
09 September 1980
Published:
11 December 1980
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Ellen C. Koper-Zwarthoff, Frans Th. Brederode, Gerrit Veeneman, Jacques H. van Boom, John F. Bol, Nucleotide sequences at the 5′-termini of the alfalfa mosaic virus RNAs and the intercistronic junction in RNA 3, Nucleic Acids Research, Volume 8, Issue 23, 11 December 1980, Pages 5635–5647, https://doi.org/10.1093/nar/8.23.5635
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Abstract
Nucleotide sequences at the 5′-termini of the alfalfa mosaic virus genomic RNAs and the intercistronic junction in RNA 3 were deduced and compared to identify possible common recognition signals for replicating enzymes in the corresponsing minus-stranded viral RNAs. Homology between the 5′-terminal sequences is less than 11 nucleotides and no complementarity with the homologous sequence occurring at the 3′-end of the viral RNAs was observed. Homology between the 5′-terminus and intercistronic region in RNA 3 is compatible with the synthesis of subgenomic RNA 4 by internal initiation of transcription on the RNA 3 minusstrands. The sequence around the intercistronic junction can be folded into a very stable secondary structure.
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