Analysis of the Arabidopsis Mitochondrial Proteome (original) (raw)

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1Department of Biochemistry, Faculty of Medicine and Dentistry, and the Plant Sciences Group, Faculty of Agriculture, The University of Western Australia, Crawley 6009, Western Australia, Australia (A.H.M.); and

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2Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, United Kingdom (L.J.S., P.G., C.J.L.)

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2Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, United Kingdom (L.J.S., P.G., C.J.L.)

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2Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, United Kingdom (L.J.S., P.G., C.J.L.)

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Revision received:

31 May 2001

Published:

01 December 2001

Cite

A. Harvey Millar, Lee J. Sweetlove, Philippe Giegé, Christopher J. Leaver, Analysis of the Arabidopsis Mitochondrial Proteome, Plant Physiology, Volume 127, Issue 4, December 2001, Pages 1711–1727, https://doi.org/10.1104/pp.010387
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Abstract

The complete set of nuclear genes that encode proteins targeted to mitochondria in plants is currently undefined and thus the full range of mitochondrial functions in plants is unknown. Analysis of two-dimensional gel separations of Arabidopsis cell culture mitochondrial protein revealed approximately 100 abundant proteins and 250 low-abundance proteins. Comparison of subfractions of mitochondrial protein on two-dimensional gels provided information on the soluble, membrane, or integral membrane locations of this protein set. A total of 170 protein spots were excised, trypsin-digested, and matrix-assisted laser desorption ionization/time of flight mass spectrometry spectra obtained. Using this dataset, 91 of the proteins were identified by searching translated Arabidopsis genomic databases. Of this set, 81 have defined functions based on sequence comparison. These functions include respiratory electron transport, tricarboxylic acid cycle metabolism, amino acid metabolism, protein import, processing, and assembly, transcription, membrane transport, and antioxidant defense. A total of 10 spectra were matched to Arabidopsis putative open reading frames for which no specific function has been determined. A total of 64 spectra did not match to an identified open reading frame. Analysis of full-length putative protein sequences using bioinformatic tools to predict subcellular targeting (TargetP, Psort, and MitoProt) revealed significant variation in predictions, and also a lack of mitochondrial targeting prediction for several characterized mitochondrial proteins.

Copyright © 2001 American Society of Plant Physiologists

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