Candidatus ‘Chloroploca asiatica’ gen. nov., sp. nov., a new mesophilic filamentous anoxygenic phototrophic bacterium (original) (raw)

References

  1. Pierson, B.K. and Castenholz, R.W., A phototrophic, gliding filamentous bacterium of hot springs, Chloroflexus aurantiacus, gen. and sp. nov., Arch. Microbiol., 1974, vol. 100, pp. 5–24.
    Article CAS PubMed Google Scholar
  2. Pierson, B.K., Giovannoni, S.J., Stahl, D.A., and Castenholz, R.W., Heliothrix oregonensis, gen. nov., sp. nov., a phototrophic filamentous gliding bacterium containing bacteriochlorophyll a, Arch. Microbiol., 1985, vol. 142, pp. 164–167.
    Article CAS PubMed Google Scholar
  3. Hanada, S., Hiraishi, A., Shimada, K., and Matsuura, K., Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement, Int. J. Syst. Evol. Microbiol., 1995, vol. 45, no. 4, pp. 676–681.
    CAS Google Scholar
  4. Hanada, S., Takaichi, S., Matsuura, K., and Nakamura, K., Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes, Int. J. Syst. Evol. Microbiol., 2002, vol. 52, pp. 187–193.
    Article CAS PubMed Google Scholar
  5. Keppen, O.I., Tourova, T.P., Kuznetsov, B.B., Ivanovsky, R.N., and Gorlenko, V.M., Proposal of Oscillochloridaceae fam. nov. on the basis of a phylogenetic analysis of the filamentous anoxygenic phototrophic bacteria, and emended description of Oscillochloris and Oscillochloris trichoides in comparison with further new isolates, Int. J. Syst. Evol. Microbiol., 2000, vol. 50, pp. 1529–1537.
    Article PubMed Google Scholar
  6. Bryant, D.A., Liu, Z., Li, T., Zhao, F., Garcia Costas, A.M., Klatt, C.G., Ward, D.M., Frigaard, N.U., and Overmann, J., Comparative and functional genomics of anoxygenic green bacteria from the taxa Chlorobi, Chloroflexi and Acidobacteria in Advances in Photosynthesis and Respiration. Functional Genomics and Evolution of Photosynthetic Systems, Burnap, R.L. and Vermaas, W., Eds., Dordrecht: Springer, 2012, vol. 35, pp. 47–102.
    Chapter Google Scholar
  7. Gupta, R.S., Chander, P., and George, S., Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Cloroflexia class. nov. [corrected] into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov., Antonie van Leeuwenhoek, 2013, vol. 103, no. 1, pp. 99–119.
    Article PubMed Google Scholar
  8. Gorlenko, V.M., Characteristics of filamentous phototrophic bacteria from freshwater lakes, Mikrobiologiya, 1975, vol. 44, no. 4, pp. 680–684.
    Google Scholar
  9. Pivovarova, T.A. and Gorlenko, V.M., Fine stracture of Chloroflexus aurantiacus var. mesophilus (nom. prof.) grown in light under aerobic and anaerobic conditions, Mikrobiologiya, 1977, vol. 46, no. 2, pp. 329–334.
    CAS Google Scholar
  10. Dubinina, G.A. and Gorlenko, V.M., New filamentous photosynthetic green bacteria containing gas vacuoles, Mikrobiologiya, 1975, vol. 44, no. 3, pp. 452–458.
    Google Scholar
  11. Gorlenko, V.M. and Pivovarova, T.A., On the belonging of bluegreen alga Oscillatoria coerulescens Gicklhorn, 1921 to a new genus of chlorobacteria Oscillochloris nov. gen., Izv. Akad. Nauk SSSR Ser. Biol., 1977, no. 3, pp. 396–409.
    Google Scholar
  12. Gorlenko, V.M. and Korotkov, S.A., Morphological and physiological features of the new filamentous gliding green bacterium Oscillochloris trichoides nov. comb., Izv. Akad. Nauk SSSR Ser. Biol., 1979, no. 6, pp. 848–857.
    Google Scholar
  13. Benaras, L., Gich, F., Martinez-Medina, M., Miller, M., Abella, C.A., and Borrego, C.M., New phylotype of mesophilic filamentous anoxygenic phototrophic bacteria enriched from sulfide-containing environments, Environ. Microbiol. Rep., 2009, vol. 1, no. 1, pp. 86–93.
    Article Google Scholar
  14. Gorlenko, V.M., Puchkov, A.N., and Demchev, V.V., Photosynthetic microorganisms of the White Sea suporalittoral basins. Species composition, Biol. Nauki, 1985, no. 5, pp. 66–72.
    Google Scholar
  15. Pierson, B.K., Valdez, D., Larsen, M., Morgan, E., and Mack, E.E., _Chloroflexus_-like organisms from marine and hypersaline environments: distribution and diversity, Photosynth. Res., 1994, vol. 41, pp. 35–52.
    Article CAS PubMed Google Scholar
  16. Kompantseva, E.I., Sorokin, D.Yu., Gorlenko, V.M., and Namsaraev, B.B., The phototrophic community found in lake Khilganta (an alkaline saline lake located in the Southeastern Transbaikal region), Microbiology (Moscow), 2005, vol. 74, no. 3, pp. 352–361.
    Article CAS Google Scholar
  17. Bachar, A., Omoregie, E., de Wit, R., and Jonkers, H.M., Diversity and function of _Chloroflexus_-like bacteria in a hypersaline microbial mat: phylogenetic characterization and impact on aerobic respiration, Appl. Environ. Microbiol., 2007, vol. 73, no. 12, pp. 3975–3983.
    Article CAS PubMed Central PubMed Google Scholar
  18. Nubel, U., Bateson, M.M., Madigan, M.T., Kuhl, M., and Ward, D.M., Diversity and distribution in hypersaline microbial mats of bacteria related to Chloroflexus spp., Appl. Environ. Microbiol., 2001, vol. 67, no. 9, pp. 4365–4371.
    Article CAS PubMed Central PubMed Google Scholar
  19. Klappenbach, J.A. and Pierson, B.K., Phylogenetic and physiological characterization of a filamentous anoxygenic photoautotrophic bacterium _Candidatus_’ Chlorothrix halophila’ gen. nov., sp. nov., recovered from hypersaline microbial mats, Arch. Microbiol., 2004, vol. 181, pp. 17–25.
    Article CAS PubMed Google Scholar
  20. Tourova, T.P., Spiridonova, E.M., Slobodova, N.V., Bulygina, E.S., Keppen, O.I., Kuznetsov, B.B., and Ivanovsky, R.N., Phylogeny of anoxygenic filamentous phototrophic bacteria of the family Oscillochloridaceae as inferred from comparative analyses of the _rrs, cbb_L and _nif_H genes, Microbiology (Moscow), 2006, vol. 75, no. 2, pp. 192–200.
    Article CAS Google Scholar
  21. Kuznetsov, B.B., Ivanovsky, R.N., Keppen, O.I., Sukhacheva, M.V., Bumazhkin, B.K., Patutina, E.O., Beletsky, A.V., Mardanov, A.V., Baslerov, R.V., Panteleeva, A.N., Kolganova, T.V., Ravin, N.V., and Skryabin, K.G., Draft genome sequence of the anoxygenic filamentous phototrophic bacterium Oscillochloris trichoides ssp. DG-6, J. Bacteriol., 2011, vol. 193, no. 1, pp. 321–322.
    Article CAS PubMed Central PubMed Google Scholar
  22. Hanada, S. and Pierson, B.K., The family Chloroflexaceae, in The Prokaryotes, 2006, vol. 7, Ch. 10.1, pp. 815–842.
    Article Google Scholar
  23. Moskalenko, A.A. and Makhneva, Z.K., Light-harvesting complexes from purple sulfur bacteria Allochromatium minutissimum assembled without carotenoids, J. Photochem. Photobiol. B, 2012, vol. 108, no. 1, pp. 1–7.
    Article CAS PubMed Google Scholar
  24. Wilson, K., Preparation of genomic DNA from bacteria, in Current Protocols in Molecular Biology, 2001, 00:2.4.1–2.4.5.
    Google Scholar
  25. Lane, D.J., 16S/23S rRNA sequencing, in Nucleic Acid Techniques in Bacterial Systematics, Stackebrandt, E. and Goodfellow, M., Eds., New York: Wiley, 1991, pp. 115–175.
    Google Scholar
  26. Kalashnikov, A.M., Gaisin, V.A., Sukhacheva, M.V., Namsaraev, B.B., Panteleeva, A.N., Nuyanzina-Boldareva, E.N., Kuznetsov, B.B., and Gorlenko, V.M., Anoxygenic phototrophic bacteria from microbial communities of Goryachinsk thermal spring (Baikal area, Russia), Microbiology (Moscow), 2014, vol. 83, no. 4, pp. 388–402.
    Article Google Scholar
  27. Gupta, R.S., Molecular signatures for the main phyla of photosynthetic bacteria and their subgroups, Photosynth. Res., 2010, vol. 104, pp. 357–372.
    Article CAS PubMed Google Scholar
  28. Hall, T.A., BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symp. Ser., 1999, no. 41, pp. 95–98.
    Google Scholar
  29. Ashelford, K.E., Chuzhanova, N.A., Fry, J.C., Jones, A.J., and Weightman, A.J., At least one in twenty 16S rRNA sequence records currently held in public repositories estimated to contain substantial anomalies, Appl. Environ. Microbiol., 2005, vol. 12, pp. 7724–7736.
    Article Google Scholar
  30. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S., MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol. Biol. Evol., 2011, vol. 28, pp. 2731–2739.
    Article CAS PubMed Central PubMed Google Scholar
  31. Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A., Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations, Appl. Environ. Microbiol., 1990, vol. 56, pp. 1919–1925.
    CAS PubMed Central PubMed Google Scholar
  32. Olson, T.L., van de Meene, A.M., Francis, J.N., Pierson, B.K., and Blankenship, R.E., Pigment analysis of Candidatus ‘Chlorotrix halophile’ a green filamentous anoxigenic photototrophic bacterium, J. Bacteriol., 2007, vol. 189, no. 11, pp. 4187–4195.
    Article PubMed Central PubMed Google Scholar

Download references