ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes (original) (raw)
Figure 1
An example application of ClonalFrameML to a simulated dataset.
(A) The clonal genealogy produced by simulation. (B) Maximum-likelihood reconstructed phylogeny. (C) ClonalFrameML reconstructed phylogeny. (D) Representation of recombination events along the genome for each branch of the genealogy in (A). True events are shown in blue and events detected by ClonalFrameML are shown in red. Three branches of interest and their associated recombination events are highlighted by red boxes.