Comparative and Evolutionary Analysis of the Bacterial Homologous Recombination Systems (original) (raw)
Figure 4
Unrooted Phylogenetic Tree of the RecD Protein
The dotted line separates genomes containing RecBCD from the ones containing only RecD. The tree was constructed using Tree-Puzzle, using the JTT+Γ model with eight classes [74]. Bootstraps were made using SEQBOOT and CONSENSE from the PHYLIP package [101]. C. acetobutylicum, Clostridium acetobutylicum; C. tepidum, Chlorobium tepidum; C. violaceum, Chromobacterium violaceum; D. vulgaris, Desulfovibrio vulgaris; E. carotovora, Erwinia carotovora; E. faecalis, Enterococcus faecalis; L. plantarum, Lactobacillus plantarum; L. lactis, Lactococcus lactis; P. multocida, Pasteurella multocida; M. mobile, Mycoplasma mobile; M. florum, Mesoplasma florum; M. mycoides, Mycoplasma mycoides; M. pulmonis, Mycoplasma pulmonis; P. maritima, Procholorcoccus maritima; S. enterica, Salmonella enterica; S. oneidensis, Shewanella oneidensis; X. fastidiosa, Xylella fastidiosa.