Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent (original) (raw)
Fig 2
F ST estimates based on 2001–2014 barcode data plotted with respect to inter-clinic distance.
Annotations refer to site comparisons using abbreviated clinic names (MLA for Maela, 212 parasite samples; WPA for Wang Pha, 457 parasite samples; MKK for Mae Kon Ken, 116 parasite samples; and MKT for Mawker Thai, 388 parasite samples). All parasite samples were single-infection. For a clinic pair, A and B say, the F ST estimate was based on _n_A + _n_B parasite samples, where n denotes the number of parasite samples per clinic. Error bars represent 95% confidence intervals based on bootstrapping over SNPs.