A Case Study for Large-Scale Human Microbiome Analysis Using JCVI’s Metagenomics Reports (METAREP) (original) (raw)
Figure 5
Software architecture overview.
The METAREP software integrates several open source tools to import, store and analyze metagenomics annotations. Users can analyze stored data using a variety of web based tools. A subset of the web functionality is available via a programmatic access module which allows data retrieval directly from the MySQL database and Lucene index files.