countsplit: Splitting a Count Matrix into Independent Folds (original) (raw)
Implements the count splitting methodology from Neufeld et al. (2022) <doi:10.1093/biostatistics/kxac047> and Neufeld et al. (2023) <doi:10.48550/arXiv.2307.12985>. Intended for turning a matrix of single-cell RNA sequencing counts, or similar count datasets, into independent folds that can be used for training/testing or cross validation. Assumes that the entries in the matrix are from a Poisson or a negative binomial distribution.
Version: | 4.0.0 |
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Depends: | R (≥ 2.10) |
Imports: | Matrix, methods, Rcpp |
LinkingTo: | Rcpp |
Suggests: | knitr, rmarkdown |
Published: | 2023-08-24 |
DOI: | 10.32614/CRAN.package.countsplit |
Author: | Anna Neufeld [aut, cre, cph], Mischko Heming [ctb], Joshua Popp [ctb] |
Maintainer: | Anna Neufeld |
BugReports: | https://github.com/anna-neufeld/countsplit/issues |
License: | MIT + file |
URL: | https://github.com/anna-neufeld/countsplit |
NeedsCompilation: | yes |
Materials: | README NEWS |
CRAN checks: | countsplit results |
Documentation:
Reference manual: | countsplit.pdf |
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Downloads:
Package source: | countsplit_4.0.0.tar.gz |
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Windows binaries: | r-devel: countsplit_4.0.0.zip, r-release: countsplit_4.0.0.zip, r-oldrel: countsplit_4.0.0.zip |
macOS binaries: | r-release (arm64): countsplit_4.0.0.tgz, r-oldrel (arm64): countsplit_4.0.0.tgz, r-release (x86_64): countsplit_4.0.0.tgz, r-oldrel (x86_64): countsplit_4.0.0.tgz |
Linking:
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