The moving parts of the nucleolus (original) (raw)
Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, Mann M, Lamond AI (2002) Directed proteomic analysis of the human nucleolus. Curr Biol 12:1–11 ArticlePubMed Google Scholar
Bachellerie JP, Cavaille J, Huttenhofer A (2002) The expanding snoRNA world. Biochimie 84:775–790 ArticleCASPubMed Google Scholar
Bertrand E, Fournier MJ (2004) The snoRNPs and related machines: ancient devices that mediate maturation of rRNAs and other RNAs. In: Olson MOJ (ed) The nucleolus. Landes Bioscience, Georgetown, pp 223–257 Google Scholar
Busch H, Smetana K (1970) The nucleolus. Academic, New York Google Scholar
Chan PK, Qi Y, Amley J, Koller CA (1996) Quantitation of the nucleophosmin/B23-translocation using imaging analysis. Cancer Lett 100:191–197 ArticleCASPubMed Google Scholar
Chen D, Huang S (2001) Nucleolar components involved in ribosome biogenesis cycle between the nucleolus and nucleoplasm in interphase cells. J Cell Biol 153:169–176 ArticleCASPubMedPubMed Central Google Scholar
Chen D, Dundr M, Wang C, Leung A, Lamond A, Misteli T, Huang S (2005) Condensed mitotic chromatin is accessible to the transcription machinery and chromatin structural proteins. J. Cell Biol (in press)
Cheutin T, O’Donohue MF, Beorchia A, Vandelaer M, Kaplan H, Defever B, Ploton D, Thiry M (2002) Three-dimensional organization of active rRNA genes within the nucleolus. J Cell Sci 115:3297–3307 ArticleCASPubMed Google Scholar
Cheutin T, Misteli T, Dundr M (2004) The dynamics of nucleolar components. In: Olson MOJ (eds) The nucleolus. Landes Bioscience, Georgetown, pp 29–40 Google Scholar
Chooi WY, Leiby KR (1981) An electron microscopic method for localization of ribosomal proteins during transcription of ribosomal DNA: a method for studying protein assembly. P Natl Acad Sci USA 78:4823–4827 ArticleCAS Google Scholar
Colombo E, Marine JC, Danovi D, Falini B, Pelicci PG (2002) Nucleophosmin regulates the stability and transcriptional activity of p53. Nat Cell Biol 4:529–533 ArticleCASPubMed Google Scholar
Daelemans D, Costes SV, Cho EH, Erwin-Cohen RA, Lockett S, Pavlakis GN (2004) In vivo HIV-1 Rev multimerization in the nucleolus and cytoplasm identified by fluorescence resonance energy transfer. J Biol Chem 279:50167–50175 ArticleCASPubMed Google Scholar
Daniely Y, Borowiec JA (2000) Formation of a complex between nucleolin and replication protein a after cell stress prevents initiation of DNA replication. J Cell Biol 149:799-809 ArticleCASPubMedPubMed Central Google Scholar
David-Pfeuty T, Nouvian-Dooghe Y (2002) Human p14(Arf): an exquisite sensor of morphological changes and of short-lived perturbations in cell cycle and in nucleolar function. Oncogene 21:6779–6790 ArticleCASPubMed Google Scholar
Dela Cruz J, Kressler D, Linder P (2004) Ribosomal subunit assembly In: Olson MOJ (ed) The nucleolus. Landes Bioscience, Georgetown, pp 258–285 Google Scholar
Derenzini M, Treré D, Pession A, Govoni M, Sirri V, Chieco P (2000) Nucleolar size indicates the rapidity of cell proliferation in cancer tissues. J Pathol 191:181–186 ArticleCASPubMed Google Scholar
Desai A, Mitchison TJ (1997) Microtubule polymerization dynamics. Annu Rev Cell Dev Biol 13:83–117 ArticleCASPubMed Google Scholar
DiMario PJ (2004) Cell and molecular biology of nucleolar assembly and disassembly. Int Rev Cytol 239:99–178 ArticleCASPubMed Google Scholar
Dundr M, Misteli T (2003) Measuring dynamics of nuclear proteins by photobleaching. Current Protocols in Cell Biology, Unit 13.5 (1–18), Supplement 18.
Dundr M, Misteli T (2004) Transcriptional complexity from dynamic interaction networks in vivo. Current Genom 5(7):559–566 ArticleCAS Google Scholar
Dundr M, Olson MO (1998) Partially processed pre-rRNA is preserved in association with processing components in nucleolus-derived foci during mitosis. Mol Biol Cell 9:2407–2422 ArticleCASPubMedPubMed Central Google Scholar
Dundr M, Hoffmann-Rohrer U, Hu QY, Grummt I, Rothblum LI, Phair RD, Misteli T (2002) A kinetic framework for a mammalian RNA polymerase in vivo. Science 298:1623–1626 ArticleCASPubMed Google Scholar
Fakan S (2004) The functional architecture of the nucleus as analysed by ultrastructural cytochemistry. Histochem Cell Biol 122:83–93 ArticleCASPubMed Google Scholar
Fan H, Penman S (1971) Regulation of synthesis and processing of nucleolar components in metaphase-arrested cells. J Mol Biol 59:27–42 ArticleCASPubMed Google Scholar
Fankhauser C, Izaurralde E, Adachi Y, Wingfield P, Laemmli UK (1991) Specific complex of human immunodeficiency virus type 1 rev and nucleolar B23 proteins: dissociation by the Rev response element. Mol Cell Biol 11:2567–2575 CASPubMedPubMed Central Google Scholar
Funaki K, Katsumoto T, Iino A (1995) Immunocytochemical localization of actin in the nucleolus of rat oocytes. Biol Cell 84:139–146 ArticleCASPubMed Google Scholar
Gautier T, Robert-Nicoud M, Guilly MN, Hernandez-Verdun D (1992) Relocation of nucleolar proteins around chromosomes at mitosis. A study by confocal laser scanning microscopy. J Cell Sci 102 (Pt 4):729–737 ArticleCASPubMed Google Scholar
Hadjiolov A (1985) The nucleolus and ribosome biogenesis. Springer, New York Book Google Scholar
Hernandez-Verdun D (2004) Behavior of the nucleolus during mitosis. In: Olson MOJ (ed) The nucleolus. Landes Bioscience, Georgetown, pp 41–57 Google Scholar
Itahana K, Bhat KP, Jin A, Itahana Y, Hawke D, Kobayashi R, Zhang Y (2003) Tumor suppressor ARF degrades B23, a nucleolar protein involved in ribosome biogenesis and cell proliferation. Mol Cell 12:1151–1164 ArticleCASPubMed Google Scholar
Johnson AW, Lund E, Dahlberg J (2002) Nuclear export of ribosomal subunits. Trends Biochem Sci 27:580–585 ArticleCASPubMed Google Scholar
Kubota S, Copeland TD, Pomerantz RJ (1999) Nuclear and nucleolar targeting of human ribosomal protein S25: common features shared with HIV-1 regulatory proteins. Oncogene 18:1503–1514 ArticleCASPubMed Google Scholar
Kurki S, Peltonen K, Latonen L, Kiviharju TM, Ojala PM, Meek D, Laiho M (2004) Nucleolar protein NPM interacts with HDM2 and protects tumor suppressor protein p53 from HDM2-mediated degradation. Cancer Cell 5:465-475 ArticleCASPubMed Google Scholar
Leger-Silvestre I, Noaillac-Depeyre J, Faubladier M, Gas N (1997) Structural and functional analysis of the nucleolus of the fission yeast Schizosaccharomyces pombe. Eur J Cell Biol 72:13–23 CASPubMed Google Scholar
Leung AK, Lamond AI (2003) The dynamics of the nucleolus. Crit Rev Eukaryot Gene Expr 13:39–54 ArticleCASPubMed Google Scholar
Leung AK, Gerlich D, Miller G, Lyon C, Lam YW, Lleres D, Daigle N, Zomerdijk J, Ellenberg J, Lamond AI (2004) Quantitative kinetic analysis of nucleolar breakdown and reassembly during mitosis in live human cells. J Cell Biol 166:787–800 ArticleCASPubMedPubMed Central Google Scholar
Lin E, Lin SW, Lin A (2001) The participation of 5S rRNA in the co-translational formation of a eukaryotic 5S ribonucleoprotein complex. Nucleic Acids Res 29:2510–2516 ArticleCASPubMedPubMed Central Google Scholar
Liu SJ, Cai ZW, Liu YJ, Dong MY, Sun LQ, Hu GF, Wei YY, Lao WD (2004) Role of nucleostemin in growth regulation of gastric cancer, liver cancer and other malignancies. World J Gastroenterol 10:1246–1249 ArticleCASPubMedPubMed Central Google Scholar
Malim MH, Bohnlein S, Hauber J, Cullen BR (1989) Functional dissection of the HIV-1 Rev trans-activator—derivation of a trans-dominant repressor of Rev function. Cell 58:205–214 ArticleCASPubMed Google Scholar
Melese T, Xue Z (1995) The nucleolus: an organelle formed by the act of building a ribosome. Curr Opin Cell Biol 7:319–324 ArticleCASPubMed Google Scholar
Michienzi A, Cagnon L, Bahner I, Rossi JJ (2000) Ribozyme-mediated inhibition of HIV 1 suggests nucleolar trafficking of HIV-1 RNA. P Natl Acad Sci USA 97:8955–8960 ArticleCAS Google Scholar
Milkereit P, Gadal O, Podtelejnikov A, Trumtel S, Gas N, Petfalski E, Tollervey D, Mann M, Hurt E, Tschochner H (2001) Maturation and intranuclear transport of pre-ribosomes requires Noc proteins. Cell 105:499–509 ArticleCASPubMed Google Scholar
Milkereit P, Strauss D, Bassler J, Gadal O, Kuhn H, Schutz S, Gas N, Lechner J, Hurt E, Tschochner H (2003) A noc complex specifically involved in the formation and nuclear export of ribosomal 40S subunits. J Biol Chem 278:4072–4081 ArticleCASPubMed Google Scholar
Misteli T (2001) Nuclear structure-protein dynamics: implications for nuclear architecture and gene expression. Science 291:843–847 ArticleCASPubMed Google Scholar
Mosgoeller W (2004) Nucleolar ultrastructure in vertebrates. In: Olson MOJ (ed) The nucleolus. Landes Bioscience, Georgetown, pp 10–20 Google Scholar
Mougey EB, O’Reilly M, Osheim Y, Miller OL Jr, Beyer A, Sollner-Webb B (1993) The terminal balls characteristic of eukaryotic rRNA transcription units in chromatin spreads are rRNA processing complexes. Genes Dev 7:1609–1619 ArticleCASPubMed Google Scholar
Nagahama M, Hara Y, Seki A, Yamazoe T, Kawate Y, Shinohara T, Hatsuzawa K, Tani K, Tagaya M (2004) NVL2 is a nucleolar AAA-ATPase that interacts with ribosomal protein L5 through its nucleolar localization sequence. Mol Biol Cell 15(12):5712–5723 ArticleCASPubMedPubMed Central Google Scholar
Olson MOJ (2004a) Nontraditional roles of the nucleolus. In: Olson MOJ (ed) The nucleolus. Landes Bioscience, Georgetown, pp 329–342 Google Scholar
Olson MOJ (2004b) Introduction. In: Olson MOJ (ed) The nucleolus. Landes Bioscience, Georgetown, pp 1–9 Google Scholar
Olson MOJ (2004c) Sensing cellular stress: another new function for the nucleolus? Sci STKE 2004: e10 Article Google Scholar
Omer AD, Ziesche S, Ebhardt H, Dennis PP (2002) In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. P Natl Acad Sci USA 99:5289–5294 ArticleCAS Google Scholar
Pestic-Dragovich L, Stojiljkovic L, Philimonenko AA, Nowak G, Ke Y, Settlage RE, Shabanowitz J, Hunt DF, Hozak P, De Lanerolle P (2000) A myosin I isoform in the nucleus. Science 290:337–341 ArticleCASPubMed Google Scholar
Peyroche G, Milkereit P, Bischler N, Tschochner H, Schultz P, Sentenac A, Carles C Riva M (2000) The recruitment of RNA polymerase I on rDNA is mediated by the interaction of the A43 subunit with Rrn3. EMBO J 19:5473–5482 ArticleCASPubMedPubMed Central Google Scholar
Phair RD, Misteli T (2000) High mobility of proteins in the mammalian cell nucleus. Nature 404: 604–605 ArticleCASPubMed Google Scholar
Phair RD, Misteli T (2001) Kinetic modelling approaches to in vivo imaging. Nat Rev Mol Cell Biol 2:898–907 ArticleCASPubMed Google Scholar
Philimonenko VV, Zhao J, Iben S, Dingova H, Kysela K, Kahle M, Zentgraf H, Hofmann W, de Lanerolle P, Hozak P, Grummt I (2004) Nuclear actin and myosin I are required for RNA polymerase I transcription. Nature Cell Biol 6(12):1165–1172 ArticleCASPubMed Google Scholar
Politz JC, Lewandowski LB, Pederson T (2002) Signal recognition particle RNA localization within the nucleolus differs from the classical sites of ribosome synthesis. J Cell Biol 159: 411–418 ArticleCASPubMedPubMed Central Google Scholar
Politz JC, Tuft RA, Pederson T (2003) Diffusion-based transport of nascent ribosomes in the nucleus. Mol Biol Cell 14:4805–4812 ArticleCASPubMed Google Scholar
Prescott DM, Bender MA (1962) Synthesis of RNA and protein during mitosis in mammalian tissue culture cells. Exp Cell Res 26:260–268 ArticlePubMed Google Scholar
Raska I (2003) Oldies but goldies: searching for Christmas trees within the nucleolar architecture. Trends Cell Biol 13:517–525 ArticleCASPubMed Google Scholar
Raska I, Koberna K, Malinsky J, Fidlerova H, Masata M (2004) The nucleolus and transcription of ribosomal genes. Biol Cell 96:579–94 ArticleCASPubMed Google Scholar
Rodway H, Llanos S, Rowe J, Peters G. (2004) Stability of nucleolar versus non-nucleolar forms of human p14(ARF). Oncogene 23:6186–92 ArticleCASPubMed Google Scholar
Roix J, Misteli T (2002) Genomes, proteomes, and dynamic networks in the cell nucleus. Histochem Cell Biol 118:105–116 ArticleCASPubMed Google Scholar
Rubbi CP, Milner J (2003) Disruption of the nucleolus mediates stabilization of p53 in response to DNA damage and other stresses. EMBO J 22:6068–6077 ArticleCASPubMedPubMed Central Google Scholar
Ryan KM, Phillips AC, Vousden KH (1999) Regulation and function of the p53 tumor suppressor protein. Curr Opin Cell Biol 2001:332–337 Google Scholar
Savino TM, Gebrane-Younes J, De Mey J, Sibarita JB, Hernandez-Verdun D (2001) Nucleolar assembly of the rRNA processing machinery in living cells. J Cell Biol 153:1097–1110 ArticleCASPubMedPubMed Central Google Scholar
Scheer U, Hock R (1999) Structure and function of the nucleolus. Curr Opin Cell Biol 11:385–390 ArticleCASPubMed Google Scholar
Scherl A, Coute Y, Deon C, Calle A, Kindbeiter K, Sanchez JC, Greco A, Hochstrasser D, Diaz JJ. (2002) Functional proteomic analysis of human nucleolus. Mol Biol Cell 13:4100–4109 ArticleCASPubMedPubMed Central Google Scholar
Schneider DA, Nomura M (2004) RNA polymerase I remains intact without subunit exchange through multiple rounds of transcription in Saccharomyces cerevisiae. P Natl Acad Sci USA 101:15112–15117 ArticleCAS Google Scholar
Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, Tsien RY (2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat Biotechnol
Snaar S, Wiesmeijer K, Jochemsen AG, Tanke HJ, Dirks RW (2000) Mutational analysis of fibrillarin and its mobility in living human cells. J Cell Biol 151:653–662 ArticleCASPubMedPubMed Central Google Scholar
Steitz JA, Berg C, Hendrick JP, La Branch, Metspalu A, Rinke J, Yario T (1988) A 5S rRNA/L5 complex is a precursor to ribosome assembly in mammalian cells. J Cell Biol 106:545–556 ArticleCASPubMed Google Scholar
Tao W, Levine AJ (1999) P19(ARF) stabilizes p53 by blocking nucleo-cytoplasmic shuttling of Mdm2. P Natl Acad Sci USA 96:6937–6941 ArticleCAS Google Scholar
Thiry M, Goessens G (1996) The nucleolus during the cell cycle. R.G. Landes, Austin Google Scholar
Thiry M, Cheutin T, O’Donohue MF, Kaplan H, Ploton D (2000) Dynamics and three-dimensional localization of ribosomal RNA within the nucleolus. RNA 6:1750–1761 ArticleCASPubMedPubMed Central Google Scholar
Trotta CR, Lund E, Kahan L, Johnson AW, Dahlberg JE (2003) Coordinated nuclear export of 60S ribosomal subunits and NMD3 in vertebrates. EMBO J 22:2841–2851 ArticleCASPubMedPubMed Central Google Scholar
Tschochner H, Hurt E (2003) Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends Cell Biol 13:255–263 ArticleCASPubMed Google Scholar
Weber JD, Kuo ML, Bothner B, DiGiammarino EL, Kriwacki RW, Roussel MF, Sherr CJ (2000) Cooperative signals governing ARF-Mdm2 interaction and nucleolar localization of the complex. Mol Cell Biol 20:2517–2528 ArticleCASPubMedPubMed Central Google Scholar
Zhang Y, Xiong Y (1999) Mutations in human ARF exon 2 disrupt its nucleolar localization and impair its ability to block nuclear export of MDM2 and p53. Mol Cell 3:579–591 ArticleCASPubMed Google Scholar
Zhang YP, Xiong Y (2001) Control of p53 ubiquitination and nuclear export by MDM2 and ARF. Cell Growth Differentiation 12:175–186 CASPubMed Google Scholar
Zhang Y, Wolf GW, Bhat K, Jin A, Allio T, Burkhart WA, Xiong Y (2003) Ribosomal protein L11 negatively regulates oncoprotein MDM2 and mediates a p53-dependent ribosomal-stress checkpoint pathway. Mol Cell Biol 23:8902-8912 ArticleCASPubMedPubMed Central Google Scholar
Zolotukhin AS, Felber BK (1999) Nucleoporins Nup98 and Nup214 participate in nuclear export of human immunodeficiency virus type 1 Rev. J Virol 73:120–127 ArticleCASPubMedPubMed Central Google Scholar