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Number of items: 61.
2026
Uzma, Uzma, Quinn, Dominic, Vignola, Marta 
ORCID: https://orcid.org/0000-0002-3457-5748, Lenselink, Jeanine, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730 and Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384(2026)Neural Network-driven Nonlinear Analysis of Beta Diversity in Microbial Communities with DeepBeta. In: 12th International Conference on Biomedical and Bioinformatics Engineering (ICBBE 2025), Tokyo, Japan, 27-30 Nov 2025, (Accepted for Publication)
2025
Quinn, Dominic, Vignola, Marta ORCID: https://orcid.org/0000-0002-3457-5748, Lenselink, Jeanine, Moore, Graeme, Connelly, Stephanie ORCID: https://orcid.org/0000-0001-5261-2090, Gauchotte-Lindsay, Caroline ORCID: https://orcid.org/0000-0002-4970-5031, Ijaz, Umer, Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384 and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2025)Deterministically selected rare taxa drive changes in community composition in drinking water biological activated carbon filters. Environmental Microbiome, (doi: 10.1186/s40793-025-00820-4) (PMID:41276853) (In Press)
Comadran Casas, C. et al. (2025)Feasibility of microbial-induced calcite precipitation in soils polluted by hydrocarbons. Environmental Science: Processes and Impacts, (doi: 10.1039/d5em00531k) (PMID:41252718) (Early Online Publication)
Uzma, Cholet, Fabien, Quinn, Dominic, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, You, Siming ORCID: https://orcid.org/0000-0003-2175-7291 and Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384(2025)A machine learning model guided by physical principles for biofilter performance prediction. Scientific Reports, 15, 34664. (doi: 10.1038/s41598-025-18585-8)
Cholet, Fabien, Vignola, Marta ORCID: https://orcid.org/0000-0002-3457-5748, Quinn, Dominic, Ijaz, Umer Z., Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384 and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2025)Microbial ecology of drinking water biofiltration based on 16S rRNA sequencing: a meta-analysis. Water Research, 281, 123684. (doi: 10.1016/j.watres.2025.123684) (PMID:40280003)
Thom, Claire, Ijaz, Umer, Moore, Graeme, Weir, Paul and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2025)Evaluation of existing lacZ primers and de novo design of an optimised qPCR assay to quantify coliform bacteria in drinking water. Journal of Applied Microbiology, 136(7), lxaf156. (doi: 10.1093/jambio/lxaf156) (PMID:40560531)
Li, Xiaobo, Song, Yanqing ORCID: https://orcid.org/0000-0002-8338-4016, Glidle, Andrew, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730, Sloan, William ORCID: https://orcid.org/0000-0002-9450-7384, Cusack, Maggie and Yin, Huabing ORCID: https://orcid.org/0000-0001-7693-377X(2025)A simple three-dimensional microfluidic platform for studying chemotaxis and cell sorting. Lab on a Chip, 25(3), pp. 343-353. (doi: 10.1039/D4LC00892H) (PMID:39758022)
2024
Fantinelli Franco, Fabiane ORCID: https://orcid.org/0000-0002-3891-2334, Malik, Muhammad, Manjakkal, Libu ORCID: https://orcid.org/0000-0001-7933-6321, Roshanghias, Ali, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730 and Gauchotte-Lindsay, Caroline ORCID: https://orcid.org/0000-0002-4970-5031(2024)Optimising carbon structures in laser-induced graphene electrodes using design of experiments for enhanced electrochemical sensing characteristics. ACS Applied Materials and Interfaces, 16(47), pp. 65489-65502. (doi: 10.1021/acsami.4c13124) (PMID:39539231) (PMCID:PMC11615855)
Fantinelli Franco, Fabiane ORCID: https://orcid.org/0000-0002-3891-2334, Malik, Muhammad Hassan, Manjakkal, Libu, Roshanghias, Ali, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730 and Gauchotte-Lindsay, Caroline ORCID: https://orcid.org/0000-0002-4970-5031(2024)Optimizing carbon structures in laser-induced graphene electrodes using design of experiments for enhanced electrochemical sensing characteristics. ACS Applied Materials and Interfaces, 16(47), pp. 65489-65502. (doi: 10.1021/acsami.4c13124) (PMID:39539231)
Stewart, Kelly, Boerlage, Annette S., Barr, William, Ijaz, Umer Z. ORCID: https://orcid.org/0000-0001-5780-8551 and Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730(2024)Hatchery type influences the gill microbiome of Atlantic farmed salmon (Salmo salar) after transfer to sea. Animal Microbiome, 6, 65. (doi: 10.1186/s42523-024-00347-y) (PMID:39516952) (PMCID:PMC11549768)
Cholet, Fabien, Agogué, Hélène, Ijaz, Umer Z. ORCID: https://orcid.org/0000-0001-5780-8551, Lachaussée, Nicolas, Pineau, Philippe and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2024)Low-abundant but highly transcriptionally active uncharacterised Nitrosomonas drive ammonia-oxidation in the Brouage mudflat, France. Science of the Total Environment, 946, 174312. (doi: 10.1016/j.scitotenv.2024.174312) (PMID:38936706)
Martin, Signe, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730, Stewart, Kelly, Barr, William, Cheslett, Deborah, O'Connor, Ian, Swords, Fiona, Ijaz, Umer Zeeshan ORCID: https://orcid.org/0000-0001-5780-8551 and O'Dwyer, Katie(2024)The hepatopancreas microbiome of velvet crab, Necora puber. Environmental Microbiology Reports, 16(5), e70014. (doi: 10.1111/1758-2229.70014) (PMID:39354672)
Quinn, Dominic, Tsagkari, Erifyli ORCID: https://orcid.org/0000-0002-7810-3048, Bhandari, Dinesh S. ORCID: https://orcid.org/0000-0002-7753-5535, Fish, Katherine, You, Siming ORCID: https://orcid.org/0000-0003-2175-7291, Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384, Boxall, Joby and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2024)Pseudomonas aeruginosa interactions with drinking water biofilm after an acute spike in annular bioreactors—attachment, persistence, release, and reattachment. In: 3rd International Joint Conference on Water Distribution Systems Analysis & Computing and Control for the Water Industry (WDSA/CCWI 2024), Ferrara, Italy, 01-04 Jul 2024, p. 148. (doi: 10.3390/engproc2024069148)
Shi, X. et al. (2024)Microbial stratification and DOM removal in drinking water biofilters: implications for enhanced performance. Water Research, 262, 122053. (doi: 10.1016/j.watres.2024.122053)
Singh Bhandari, Dinesh ORCID: https://orcid.org/0000-0002-7753-5535, Quinn, Dominic, Tsagkari, Erifyli ORCID: https://orcid.org/0000-0002-7810-3048, Fish, Katherine, Pick, Frances, Boxall, Joby, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730, You, Siming ORCID: https://orcid.org/0000-0003-2175-7291 and Sloan, William ORCID: https://orcid.org/0000-0002-9450-7384(2024)Modelling the Dynamics of P. aeruginosa in the Formation of Biofilms. In: 3rd International Joint Conference on Water Distribution Systems Analysis & Computing and Control for the Water Industry (WDSA/CCWI 2024), Ferrara, Italy, 01-04 Jul 2024, p. 141. (doi: 10.3390/engproc2024069141)
Cossu, Laura O., De Aquino, Sérgio Francisco, Filho, César Rossas Mota, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730 and Vignola, Marta ORCID: https://orcid.org/0000-0002-3457-5748(2024)Review on pesticide contamination and drinking water treatment in Brazil: the need for improved treatment methods. ACS ES&T Water, 4(9), pp. 3629-3644. (doi: 10.1021/acsestwater.4c00063)
Hassard, F. et al. (2024)Scaling-up engineering biology for enhanced environmental solutions. ACS Synthetic Biology, 13(6), pp. 1586-1588. (doi: 10.1021/acssynbio.4c00292) (PMID:38903005)
2023
Okonkwo, Valentine, Cholet, Fabien, Ijaz, Umer Z. ORCID: https://orcid.org/0000-0001-5780-8551, Koottatep, Thammarat, Pussayanavin, Tatchai, Polpraset, Chongrak, Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384, Connelly, Stephanie ORCID: https://orcid.org/0000-0001-5261-2090 and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2023)intI1 gene abundance from septic tanks in Thailand using validated intI1 primers. Applied and Environmental Microbiology, 89(11), e01071-23. (doi: 10.1128/aem.01071-23) (PMID:37874304) (PMCID:PMC10686061)
Vignola, Marta ORCID: https://orcid.org/0000-0002-3457-5748, Lenselink, Jeanine, Quinn, Dominic, Ijaz, Umer Zeeshan ORCID: https://orcid.org/0000-0001-5780-8551, Pereira, Ryan, Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384, Connelly, Stephanie ORCID: https://orcid.org/0000-0001-5261-2090, Moore, Graeme, Gauchotte-Lindsay, Caroline ORCID: https://orcid.org/0000-0002-4970-5031 and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2023)Differential utilisation of dissolved organic matter compound fractions by different biofilter microbial communities. AQUA: Water Infrastructure, Ecosystems and Society, 72(10), pp. 1837-1851. (doi: 10.2166/aqua.2023.036)
Hajabdollahi Ouderji, Zahra, Gupta, Rohit ORCID: https://orcid.org/0000-0001-5246-0883, Mckeown, Andrew, Yu, Zhibin ORCID: https://orcid.org/0000-0003-0845-9951, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730, Sloan, William ORCID: https://orcid.org/0000-0002-9450-7384 and You, Siming ORCID: https://orcid.org/0000-0003-2175-7291(2023)Integration of anaerobic digestion with heat pump: machine learning-based technical and environmental assessment. Bioresource Technology, 369, 128485. (doi: 10.1016/j.biortech.2022.128485)
2022
Martínez-Rabert, Eloi ORCID: https://orcid.org/0000-0002-0583-3103, van Amstel, Chiel, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730, Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384 and Gonzalez-Cabaleiro, Rebeca ORCID: https://orcid.org/0000-0002-4000-5928(2022)Environmental and ecological controls of the spatial distribution of microbial populations in aggregates. PLoS Computational Biology, 18(12), e1010807. (doi: 10.1371/journal.pcbi.1010807) (PMID:36534694) (PMCID:PMC9810174)
Birlanga, Victor B., McCormack, Grace, Ijaz, Umer Z. ORCID: https://orcid.org/0000-0001-5780-8551, MacCarthy, Eugene, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730 and Collins, Gavin(2022)Dynamic gill and mucus microbiomes during a gill disease episode in farmed Atlantic salmon. Scientific Reports, 12, 16719. (doi: 10.1038/s41598-022-17008-2) (PMID:36202859) (PMCID:PMC9537138)
Gupta, Rohit ORCID: https://orcid.org/0000-0001-5246-0883, McRoberts, Ruairidh, Yu, Zhibin ORCID: https://orcid.org/0000-0003-0845-9951, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730, Sloan, William ORCID: https://orcid.org/0000-0002-9450-7384 and You, Siming ORCID: https://orcid.org/0000-0003-2175-7291(2022)Life cycle assessment of biodiesel production from rapeseed oil: influence of process parameters and scale. Bioresource Technology, 360, 127532. (doi: 10.1016/j.biortech.2022.127532) (PMID:35772716)
Cholet, Fabien, Lisik, Agata, Agogué, Hélène, Ijaz, Umer Z. ORCID: https://orcid.org/0000-0001-5780-8551, Pineau, Philippe, Lachaussée, Nicolas and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2022)Ecological observations based on functional gene sequencing are sensitive to the amplicon processing method. mSphere, 7(4), e0032422. (doi: 10.1128/msphere.00324-22) (PMID:35938727) (PMCID:PMC9429940)
Keating, C. ORCID: https://orcid.org/0000-0001-9199-3068, Bolton-Warberg, M., Hinchcliffe, J., Davies, R., Whelan, S., Wan, A.H.L., Fitzgerald, R.D., Davies, S.J., Smith, C.J. ORCID: https://orcid.org/0000-0003-4905-0730 and Ijaz, U.Z. ORCID: https://orcid.org/0000-0001-5780-8551(2022)Drivers of ecological assembly in the hindgut of Atlantic Cod fed a macroalgal supplemented diet. npj Biofilms and Microbiomes, 8, 36. (doi: 10.1038/s41522-022-00296-x) (PMID:35508464) (PMCID:PMC9068720)
Martinez-Rabert, Eloi, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Sloan, William T. ORCID: https://orcid.org/0000-0002-9450-7384 and González‐Cabaleiro, Rebeca(2022)Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions. Biotechnology and Bioengineering, 119(5), pp. 1290-1300. (doi: 10.1002/bit.28045) (PMID:35092010)
Thom, Claire, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Moore, Graeme, Weir, Paul and Ijaz, Umer Z. ORCID: https://orcid.org/0000-0001-5780-8551(2022)Microbiomes in drinking water treatment and distribution: a meta-analysis from source to tap. Water Research, 212, 118106. (doi: 10.1016/j.watres.2022.118106) (PMID:35091225)
Khan, Alam, Akbar, Sedrah, Okonkwo, Valentine, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730, Khan, Samiullah, Shah, Aamer Ali, Adnan, Fazal, Ijaz, Umer Zeeshan ORCID: https://orcid.org/0000-0001-5780-8551, Ahmed, Safia and Badshah, Malik(2022)Enrichment of the hydrogenotrophic methanogens for, in-situ biogas up-gradation by recirculation of gases and supply of hydrogen in methanogenic reactor. Bioresource Technology, 345, 126219. (doi: 10.1016/j.biortech.2021.126219) (PMID:34813923)
Tatti, Enrico, Duff, Aoife, Kostrysia, Anastasiia, Cholet, Fabien, Ijaz, Umer ORCID: https://orcid.org/0000-0001-5780-8551 and Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730(2022)Potential nitrification activity reflects ammonia oxidising bacteria but not archaea activity across a soil-sediment gradient. Estuarine, Coastal and Shelf Science, 264, 107666. (doi: 10.1016/j.ecss.2021.107666)
2021
González-Cabaleiro, Rebeca ORCID: https://orcid.org/0000-0002-4000-5928, Martinez-Rabert, Eloi ORCID: https://orcid.org/0000-0002-0583-3103, Argiz, Lucia, van Kessel, Maartje A.H.J. and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2021)A framework based on fundamental biochemical principles to engineer microbial community dynamics. Current Opinion in Biotechnology, 67, pp. 111-118. (doi: 10.1016/j.copbio.2021.01.001) (PMID:33540361)
Keating, C. ORCID: https://orcid.org/0000-0001-9199-3068, Bolton-Warberg, M., Hinchcliffe, J., Davies, R., Whelan, S., Wan, A.H.L., Fitzgerald, R.D., Davies, S.J., Ijaz, U.Z. ORCID: https://orcid.org/0000-0001-5780-8551 and Smith, C.J. ORCID: https://orcid.org/0000-0003-4905-0730(2021)Temporal changes in the gut microbiota in farmed Atlantic cod (Gadus morhua) outweigh the response to diet supplementation with macroalgae. Animal Microbiome, 3, 7. (doi: 10.1186/s42523-020-00065-1) (PMID:33500003) (PMCID:PMC7934267)
Champion, Teteh S., Connelly, Stephanie ORCID: https://orcid.org/0000-0001-5261-2090, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730 and Lamberton, Poppy H.L. ORCID: https://orcid.org/0000-0003-1048-6318(2021)Monitoring schistosomiasis and sanitation interventions—the potential of environmental DNA. Wiley Interdisciplinary Reviews: Water, 8(1), e1491. (doi: 10.1002/wat2.1491)
2020
Cholet, Fabien, Ijaz, Umer Z. ORCID: https://orcid.org/0000-0001-5780-8551 and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2020)Reverse transcriptase enzyme and priming strategy affect quantification and diversity of environmental transcripts. Environmental Microbiology, 22(6), pp. 2383-2402. (doi: 10.1111/1462-2920.15017) (PMID:32285609)
2019
Cholet, Fabien, Ijaz, Umer Z. ORCID: https://orcid.org/0000-0001-5780-8551 and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2019)Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples. Environmental Microbiology, 21(2), pp. 827-844. (doi: 10.1111/1462-2920.14516) (PMID:30585386) (PMCID:PMC6392129)
Keating, Ciara ORCID: https://orcid.org/0000-0001-9199-3068, Hinchcliff, James, Davies, Robert ORCID: https://orcid.org/0000-0002-6342-2222, Wan, Alexander, Davies, Simon, Fitzgerald, Richard, Ijaz, Umer ORCID: https://orcid.org/0000-0001-5780-8551, Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730 and Bolton, Majbritt(2019)Effects of Supplementing a Fishmeal Diet with Algae on the Hindgut Microbiome of Farmed Atlantic Cod (Gadus Morhua) [Poster]. 8th Congress of European Microbiologists, Glasgow, UK, 07-11 Jul 2019.
2018
Zhang, Limei, Duff, Aoife and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2018)Community and functional shifts in ammonia oxidizers across terrestrial and marine (soil/sediment) boundaries in two coastal Bay ecosystems. Environmental Microbiology, 20(8), pp. 2834-2853. (doi: 10.1111/1462-2920.14238) (PMID:29687546)
Reich, Inga, Ijaz, Umer Zeeshan ORCID: https://orcid.org/0000-0001-5780-8551, Gormally, Mike and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2018)16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus. Scientific Reports, 8, 10402. (doi: 10.1038/s41598-018-28720-3) (PMID:29991804) (PMCID:PMC6039444)
Keating, C. ORCID: https://orcid.org/0000-0001-9199-3068, Hughes, D., Mahony, T., Cysneiros, D., Ijaz, U.Z. ORCID: https://orcid.org/0000-0001-5780-8551, Smith, C.J. ORCID: https://orcid.org/0000-0003-4905-0730 and O‘Flaherty, V.(2018)Cold adaptation and replicable microbial community development during long-term low temperature anaerobic digestion treatment of synthetic sewage. FEMS Microbiology Ecology, 94(7), fiy095. (doi: 10.1093/femsec/fiy095) (PMID:29846574) (PMCID:PMC5995215)
2017
Duff, Aoife M., Zhang, Li-Mei and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2017)Small-scale variation of ammonia oxidisers within intertidal sediments dominated by ammonia-oxidising bacteria Nitrosomonas sp. amoA genes and transcripts. Scientific Reports, 7, 13200. (doi: 10.1038/s41598-017-13583-x) (PMID:29038459) (PMCID:PMC5643298)
2016
Tatti, Enrico, McKew, Boyd A., Whitby, Corrine and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2016)Simultaneous DNA-RNA extraction from coastal sediments and quantification of 16S rRNA genes and transcripts by real-time PCR. Journal of Visualized Experiments(112), e54067. (doi: 10.3791/54067) (PMCID:PMC4927785)
Abberton, Cathy L., Bereschenko, Ludmila, van der Wielen, Paul W.J.J. and Smith, Cindy ORCID: https://orcid.org/0000-0003-4905-0730(2016)Survival, biofilm formation, and growth potential of environmental and enteric escherichia coli strains in drinking water microcosms. Applied and Environmental Microbiology, 82(17), pp. 5320-5331. (doi: 10.1128/AEM.01569-16) (PMID:27342552)
Keating, Ciara ORCID: https://orcid.org/0000-0001-9199-3068, Chin, Jason P., Hughes, Dermot, Manesiotis, Panagiotis, Cysneiros, Denise, Mahony, Therese, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, McGrath, John W. and O’Flaherty, Vincent(2016)Biological phosphorus removal during high-rate, low-temperature, anaerobic digestion of wastewater. Frontiers in Microbiology, 7, 226. (doi: 10.3389/fmicb.2016.00226) (PMID:26973608) (PMCID:PMC4776080)
2015
Reich, Inga, Gormally, Michael, Allcock, A. Louise, McDonnell, Rory, Castillejo, José, Iglesias, Javier, Quinteiro, Javier and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730(2015)Genetic study reveals close link between Irish and Northern Spanish specimens of the protected Lusitanian slugGeomalacus maculosus. Biological Journal of the Linnean Society, 116(1), pp. 156-168. (doi: 10.1111/bij.12568)
Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Dong, Liang F., Wilson, John, Stott, Andrew, Osborn, A. Mark and Nedwell, David B.(2015)Seasonal variation in denitrification and dissimilatory nitrate reduction to ammonia process rates and corresponding key functional genes along an estuarine nitrate gradient. Frontiers in Microbiology, 6, 542. (doi: 10.3389/fmicb.2015.00542) (PMID:26082763) (PMCID:PMC4451412)
Minogue, Elizabeth, Tuite, Nina L, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Reddington, Kate and Barry, Thomas(2015)A rapid culture independent methodology to quantitatively detect and identify common human bacterial pathogens associated with contaminated high purity water. BMC Biotechnology, 15(1), p. 6. (doi: 10.1186/s12896-015-0124-1) (PMID:25888294) (PMCID:PMC4342816)
Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, McKew, Boyd A., Coggan, A. and Whitby, Corrine(2015)Primers: functional genes for nitrogen-cycling microbes in oil reservoirs. In: McGenity, Terry J., Timmis, Kenneth N. and Nogales, Balbina (eds.)Hydrocarbon and Lipid Microbiology Protocols: Primers. Series: Springer protocols handbooks. Springer: Berlin, pp. 207-241. ISBN 9783662504277(doi: 10.1007/8623_2015_184)
2014
Papaspyrou, Sokratis, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Dong, Liang F., Whitby, Corinne, Dumbrell, Alex J. and Nedwell, David B.(2014)Nitrate reduction functional genes and nitrate reduction potentials persist in deeper estuarine sediments. Why? PLoS ONE, 9(4), e94111. (doi: 10.1371/journal.pone.0094111) (PMID:24728381) (PMCID:PMC3984109)
2013
Barrett, M., Jahangir, M.M.R., Lee, C., Smith, C.J. ORCID: https://orcid.org/0000-0003-4905-0730, Bhreathnach, N., Collins, G., Richards, K.G. and O’Flaherty, V.(2013)Abundance of denitrification genes under different peizometer depths in four Irish agricultural groundwater sites. Environmental Science and Pollution Research, 20(9), pp. 6646-6657. (doi: 10.1007/s11356-013-1729-3)
2011
Dong, Liang F., Sobey, Milika Naqasima, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Rusmana, Iman, Phillips, Wayne, Stott, Andrew, Osborn, A. Mark and Nedwell, David B.(2011)Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56(1), pp. 279-291. (doi: 10.4319/lo.2011.56.1.0279)
2010
Laverock, Bonnie, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Tait, Karen, Osborn, A. Mark, Widdicombe, Steve and Gilbert, Jack A.(2010)Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4(12), pp. 1531-1544. (doi: 10.1038/ismej.2010.86) (PMID:20596074)
McKew, B.A. and Smith, C.J. ORCID: https://orcid.org/0000-0003-4905-0730(2010)Real-time PCR approaches for analysis of hydrocarbon-degrading bacterial communities. In: Timmis, Kenneth N. (ed.)Handbook of Hydrocarbon and Lipid Microbiology. Springer, pp. 3995-4009. ISBN 9783540775874(doi: 10.1007/978-3-540-77587-4_311)
2009
Dong, L.F., Smith, C.J. ORCID: https://orcid.org/0000-0003-4905-0730, Papaspyrou, S., Stott, A., Osborn, A.M. and Nedwell, D.B.(2009)Changes in Benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne Estuary, United Kingdom). Applied and Environmental Microbiology, 75(10), pp. 3171-3179. (doi: 10.1128/AEM.02511-08) (PMID:19304834) (PMCID:PMC2681644)
Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Danilowicz, Bret S. and Meijer, Wim G.(2009)Bacteria associated with the mucus layer of Merlangius merlangus (whiting) as biological tags to determine harvest location. Canadian Journal of Fisheries and Aquatic Sciences, 66(5), pp. 713-716. (doi: 10.1139/F09-035)
Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730 and Osborn, A. Mark(2009)Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67(1), pp. 6-20. (doi: 10.1111/j.1574-6941.2008.00629.x)
2007
Haynes, Kelly, Hofmann, Tanja A., Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Ball, Andrew S., Underwood, Graham J.C. and Osborn, A. Mark(2007)Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73(19), pp. 6112-6124. (doi: 10.1128/AEM.00551-07) (PMID:17675437) (PMCID:PMC2075028)
McKew, Boyd A., Coulon, Frédéric, Yakimov, Michail M., Denaro, Renata, Genovese, Maria, Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Osborn, A. Mark, Timmis, Kenneth N. and McGenity, Terry J.(2007)Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9(6), pp. 1562-1571. (doi: 10.1111/j.1462-2920.2007.01277.x) (PMID:17504493)
Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Danilowicz, Bret S. and Meijer, Wim G.(2007)Characterization of the bacterial community associated with the surface and mucus layer of whiting (Merlangius merlangus). FEMS Microbiology Ecology, 62(1), pp. 90-97. (doi: 10.1111/j.1574-6941.2007.00369.x) (PMID:17692096)
Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Nedwell, David B., Dong, Liang F. and Osborn, A. Mark(2007)Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73(11), pp. 3612-3622. (doi: 10.1128/AEM.02894-06) (PMID:17400770) (PMCID:PMC1932689)
2006
Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Nedwell, David B., Dong, Liang F. and Osborn, A. Mark(2006)Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8(5), pp. 804-815. (doi: 10.1111/j.1462-2920.2005.00963.x)
2005
Osborn, A. Mark and Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730 (Eds.) (2005)Molecular Microbial Ecology. Series: BIOS advanced methods. Taylor and Francis. ISBN 9781859962831
Smith, Cindy J. ORCID: https://orcid.org/0000-0003-4905-0730, Danilowicz, Bret S., Clear, Adrian K., Costello, Fintan J., Wilson, Bryan and Meijer, Wim G.(2005)T-Align, a web-based tool for comparison of multiple terminal restriction fragment length polymorphism profiles. FEMS Microbiology Ecology, 54(3), pp. 375-380. (doi: 10.1016/j.femsec.2005.05.002) (PMID:16332335)
This list was generated on Tue Feb 17 18:42:20 2026 GMT.