GitHub - Accio/BioQC-example: The BioQC algorithm applied to a real expression profiling dataset (original) (raw)

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• README

Case studies of BioQC

Supplementary Information for "Detect issue heterogenity in gene expression data with BioQC"

Contact: [Jitao David Zhang] (mailto:jitao_david.zhang@roche.com?subject=BioQC-example)

A rendered version of the RMarkdown files can be viewed on our website

Documents:

• bioqc-simulation.Rmd: Benchmarking sensitiviy and specificity of BioQC on simulated and real-world data.
• bioqc-kidney.Rmd: Applying BioQC to a real-world expression profiling dataset.
• bioqc-wmw-test-performance.Rmd: Explaining the advantages of the Wilcoxon-Mann-Whitney test over alternative statistical tests.