GitHub - Bioconductor/GDSArray: Representing GDS files as array-like objects (original) (raw)

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GDSArray

Representing GDS files as array-like objects

GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the GDSArrayclass to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in R. The data remains on disk until needed, so that very large files can be processed.