GitHub - RcppCore/Rcpp: Seamless R and C++ Integration (original) (raw)

Rcpp: Seamless R and C++ Integration

Synopsis

The Rcpp package integrates R and C++ via R functions and a (header-only) C++ library.

All underlying R types and objects, i.e., everything a SEXP represents internally in R, are matched to corresponding C++ objects. This covers anything from vectors, matrices or lists to environments, functions and more. Each SEXP variant is automatically mapped to a dedicated C++ class. For example, numeric vectors are represented as instances of the Rcpp::NumericVector class, environments are represented as instances of Rcpp::Environment, functions are represented asRcpp::Function, etc ... TheRcpp-introductionvignette (now published as aTAS paper; anearlier introductionwas also published as a JSS paperprovides a good entry point to Rcpp as do the Rcpp website, the Rcpp page and the Rcpp Gallery. Full documentation is provided by theRcpp book.

Other highlights:

• The conversion from C++ to R and back is driven by the templates Rcpp::wrapand Rcpp::as which are highly flexible and extensible, as documented in the Rcpp-extending vignette.
• Rcpp also provides Rcpp modules, a framework that allows exposing C++ functions and classes to the R level. The Rcpp-modules vignette details the current set of features of Rcpp-modules.
• Rcpp includes a concept called Rcpp sugar that brings many R functions into C++. Sugar takes advantage of lazy evaluation and expression templates to achieve great performance while exposing a syntax that is much nicer to use than the equivalent low-level loop code. The Rcpp-sugargives an overview of the feature.
• Rcpp attributes provide a high-level syntax for declaring C++ functions as callable from R and automatically generating the code required to invoke them. Attributes are intended to facilitate both interactive use of C++ within R sessions as well as to support R package development. Attributes are built on top of Rcpp modules and their implementation is based on previous work in the inline package. See the Rcpp-atttributes vignettes for more details.

Documentation

The package ships with ten pdf vignettes, including a recent introduction to Rcpp now published as a paper in TAS (and as apreprint in PeerJ). Also available is anearlier introductionwhich was published as a JSS paper.

Among the other vignettes are the Rcpp FAQ and the introduction to Rcpp Attributes. Additional documentation is available via the Rcpp bookby Eddelbuettel (2013, Springer); see 'citation("Rcpp")' for details.

Performance

Rcpp follows the C++ motto of "you pay only for what you use" and imposes no run-time performance penalty: Rcpp outperforms related packages in direct comparison, see for example this repo for details.

Compile-time performance can be tuned by selecting components. But it is also worth noting that use of ccache will (strongly) dominate all such possible component choices, we have previously recommended its use.

Examples

The Rcpp Gallery showcases over one hundred fully documented and working examples. Thepackage RcppExamples contains a few basic examples covering the core data types.

A number of examples are included, as are well over one thousand unit tests which provide additional usage examples.

An earlier version of Rcpp, containing what we now call the 'classic Rcpp API' was written during 2005 and 2006 by Dominick Samperi. This code has been factored out of Rcpp into the package RcppClassic, and it is still available for code relying on the older interface. New development should always use this Rcpp package instead.

Other usage examples are provided by packages using Rcpp. As of early January 2024, there are 2791 CRAN packages using Rcpp (corresponding to 13.8% of all packages, and 59.9% of packages containing compiled code), a further 254 BioConductorpackages in its current release as well as an unknown number of GitHub, Bitbucket, R-Forge, ... repositories using Rcpp. All these packages provide usage examples for Rcpp. The package is in widespread use and has been downloaded over 78.1 million times (per the partial logs from the cloud mirrors of CRAN).

Installation

CRAN

Rcpp released on CRAN are carefully tested and curated. CRAN ensures they interoperate with all other CRAN package on all test environment. The released and tested versions are available via all mirrors of CRAN network, and can be installed from within R via

Release Candidates

For the last several releases, we also made interim candidate releases available on the Rcpp Drat Repo. Versions from adrat repo can be installed either by just temporarily setting the drat repo as in

install.packages("Rcpp", repos="https://RcppCore.github.io/drat")

or by setting a drat repo more permanently (as described in the documentation of the dratpackage).

Testing the release candidates prior to actual release help. Please run this if you can.

Source

To install from source, ensure you have a complete package development environment for R as discussed in the relevant documentation; also see questions 1.2 and 1.3 in theRcpp-FAQ.

Less Common Versions and Platforms

If you want to run Rcpp on another (not-tested on CRAN) platform, or on releases older than the previous release, we suggest you do your due diligence and test accordingly. Rcpp is provided by an all-volunteer team with finite resources. We work hard to test Rcpp with several thousand CRAN packages using it---but we cannot test on outdated versions of R or your OS.

Support

The best place for questions is theRcpp-develmailing list hosted at R-forge. Note that in order to keep spam down, you must be a subscriber in order to post. One can also consult the list archives to see if your question has been asked before.

The issue tickets at the GitHub repoare the primary bug reporting interface. As with the other web resources, previous issues can be searched as well.

Authors

Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou, Nathan Russell, Iñaki Ucar, Doug Bates, and John Chambers

License

GPL (>= 2)