GitHub - mengxu98/inferCSN: An R package for inferring cell-type specific gene regulatory network from single-cell RNA data (original) (raw)

inferCSN

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Introduction

inferCSN is an R package for _infer_ring _Cell-S_pecific gene regulatory _N_etwork from single-cell RNA data.

inferCSN+ workflow diagram

Installation

You can install the released version from CRAN use:

install.packages("inferCSN")

or

if (!require("pak", quietly = TRUE)) { install.packages("pak") } pak::pak("inferCSN")

You can install the development version from GitHub use pak:

if (!require("pak", quietly = TRUE)) { install.packages("pak") } pak::pak("mengxu98/inferCSN")

Usage

Examples

For a matrix object.

library(inferCSN) data("example_matrix")

network <- inferCSN( example_matrix )

More functions and usages about inferCSN? Please reference here.

Citation

If you use inferCSN in your work, please cite it reference here.