feat: add Nextclade_pango column to metadata by ivan-aksamentov · Pull Request #291 · nextstrain/ncov-ingest (original) (raw)
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merged 3 commits into
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Mar 20, 2022
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feat: add Nextclade_pango column to metadata#291
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Copies the new Nextclade_pango column from nextclade.tsv to metadata.tsv. This column contains Pango lineages assigned using Nextclade.
Symmetrical PR in ncov: nextstrain/ncov#892
[feat: add Nextclade_pango column to metadata](/nextstrain/ncov-ingest/pull/291/commits/940fe5803100648121ee32df56c3a88d7d6605df "feat: add Nextclade_pango column to metadata")
[940fe58](/nextstrain/ncov-ingest/pull/291/commits/940fe5803100648121ee32df56c3a88d7d6605df)
feat: add Nextclade_pango column to metadatanextstrain/ncov#892
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corneliusroemer approved these changes Mar 15, 2022
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Did CI checks fail because we don't yet have Nextclade_pango in nextclade.tsv? @ivan-aksamentov
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@corneliusroemer Yes, I think so. The usual ingest full run checklist need to be executed first and then the daily ingest will be able to produce nextclade.tsv and metadata.tsv with the new cloumn.
Let's track it on Slack
https://bedfordlab.slack.com/archives/C01LCTT7JNN/p1647353315650509
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ivan-aksamentov added 2 commits
[Merge remote-tracking branch 'origin/master' into feat/nextclade-pango](/nextstrain/ncov-ingest/pull/291/commits/423926a08c0aea9cbc0dc83c9adfb0895278736b "Merge remote-tracking branch 'origin/master' into feat/nextclade-pango")
[423926a](/nextstrain/ncov-ingest/pull/291/commits/423926a08c0aea9cbc0dc83c9adfb0895278736b)
[Merge remote-tracking branch 'origin/master' into feat/nextclade-pango](/nextstrain/ncov-ingest/pull/291/commits/d90ae7b533878fe623e5bda689512f4b064f9bda "Merge remote-tracking branch 'origin/master' into feat/nextclade-pango")
[d90ae7b](/nextstrain/ncov-ingest/pull/291/commits/d90ae7b533878fe623e5bda689512f4b064f9bda)
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