Richard Corlett - Academia.edu (original) (raw)

Papers by Richard Corlett

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Ecosystem Health and Sustainability

Global biodiversity is in crisis as a result of human activity. This biodiversity crisis has been... more Global biodiversity is in crisis as a result of human activity. This biodiversity crisis has been well documented by scientists, recognized by world leaders, politicians, businesses, and citizens. Both the biodiversity and climate crises need to be addressed now. 2020 was when this change was supposed to start, with the 15th Conference of Parties (COP15) of the Convention on Biodiversity (CBD) meeting in Kunming, and the 26th Conference of Parties (COP26) of the UN Framework Convention on Climate Change meeting in Glasgow, but both meetings were postponed. COP26 was held a year late (November 2021), while COP15 was split into two, with the first part held in Kunming in October 2021, and the second part scheduled for Montreal in December 2022. This meeting in Montreal – arguably the most important in the CBDs history – must agree on the Post-2020 Global Biodiversity Framework (GBF), to reverse biodiversity loss. Failure to reach agreement in Montreal would ultimately be a failure of ...

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Scientific Reports, 2022

Although 23% of Thailand’s land is in protected areas, these are vulnerable to climate change. We... more Although 23% of Thailand’s land is in protected areas, these are vulnerable to climate change. We used spatial distribution modelling for 866 vertebrate and 591 plant species to understand potential climate change impacts on species in protected areas. Most mammals, birds, and plants were projected to decline by 2070, but most amphibians and reptiles were projected to increase. By 2070 under RCP8.5, 54% of modeled species will be threatened and 11 nationally extinct. However, SDMs are sensitive to truncation of the climate space currently occupied by habitat loss and hunting, and apparent truncation by data limitations. In Thailand, lowland forest clearance has biased records for forest-dependent species to cooler uplands (> 250 m a.s.l.) and hunting has confined larger vertebrates to well-protected areas. In contrast, available data is biased towards lowland non-forest taxa for amphibians and reptiles. Niche truncation may therefore have resulted in overestimation of vulnerabili...

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Frontiers in Plant Science, 2022

Morphological approaches often fail to delimit species in recently derived species complexes. Thi... more Morphological approaches often fail to delimit species in recently derived species complexes. This can be exacerbated in historical collections which may have lost key features in specimen preparation and preservation. Here, we examine the Pedicularis siphonantha complex, endemic to the Mountains of Southwest China. This complex is characterized by its red/purple/pink and long-tubular corolla, and twisted, beaked galea. However, herbarium specimens are often difficult to identify to species. Molecular approaches using nrITS or nuclear ribosomal internal transcribed spacer (nrITS) + plastid DNA (ptDNA) have been successfully used for species identification in Pedicularis. To resolve taxonomic confusion in the Pedicularis siphonantha complex, we reconstructed phylogenies of the complex using nrITS and four plastid DNA loci (matK, rbcL, trnH-psbA, and trnL-F). To recover as much of the phylogenetic history as possible, we sampled individuals at the population level. Topological incongr...

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Epiphytic communities live in a unique, three-dimensional micro-habitat space that offers an orig... more Epiphytic communities live in a unique, three-dimensional micro-habitat space that offers an original framework to disentangle the contribution of environmental filters, biotic interactions and dispersal limitation to community structure at small spatial scales. We took advantage of a tropical canopy crane facility to record and model spatio-temporal microclimatic variation and assess its impact on the composition and phylogenetic structure of epiphytic bryophyte communities. Generalized Dissimilarity Modelling evidenced the crucial role of microclimates in determining the composition of moss and liverwort communities. The shift between negative or non-significant phylogenetic turnover to consistently significant clustering from the base to the canopy suggests that phylogenetic constraints further contribute to shape the assembly of epiphytic bryophyte communities. The slight, but significant correlation between increasing phylogenetic clustering with variation in microclimatic cond...

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Horticulture Research, 2022

Southwest China is a plant diversity hotspot. The near-cosmopolitan genus Ilex (c. 664 spp., Aqui... more Southwest China is a plant diversity hotspot. The near-cosmopolitan genus Ilex (c. 664 spp., Aquifoliaceae) reaches its maximum diversity in this region, with many narrow-range and a few widespread species. Divergent selection on widespread species leads to local adaptation, with consequences for both conservation and utilization, but is counteracted by geneflow. Many Ilex species are utilized as teas, medicines, ornamentals, honey plants, and timber, but variation below the species level is largely uninvestigated. We therefore studied the widespread Ilex polyneura, which occupies most of the elevational range available and is cultivated for its decorative leafless branches with persistent red fruits. We assembled a chromosome-scale genome using approximately 100x whole genome long-read and short-read sequencing combined with Hi-C sequencing. The genome is approximately 727.1 Mb, with a contig N50 size of 5 124 369 bp and a scaffold N50 size of 36 593 620 bp, for which the BUSCO sco...

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Forests, 2022

The hollies (Ilex L., Aquifoliaceae) form a large (>669 spp.) genus of forest trees and shrubs... more The hollies (Ilex L., Aquifoliaceae) form a large (>669 spp.) genus of forest trees and shrubs, which is almost cosmopolitan in mesic environments but most diverse in subtropical China and montane South America. Throughout the range of the genus, Ilex species have been utilized as beverages, medicines, ornamentals, honey plants, timber, and for various other minor uses. Recent studies on the genomics, evolution, and biogeography of Ilex now make it possible to take a systematic approach to understanding and expanding the economic importance of the genus, but information on existing uses is scattered among numerous published and unpublished sources. We therefore review the existing literature on utilization of Ilex species, supplementing this with information from the grey literature and product websites. We show that, despite the number and diversity of known uses, most Ilex species are not known to be utilized at present, suggesting considerable unrealized potential. We highligh...

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Environmental Research Letters, 2021

People are now impacting the natural environment at an unparalleled scale. The Intergovernmental ... more People are now impacting the natural environment at an unparalleled scale. The Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) warns that up to one million species may be threatened with extinction. Protected areas (PAs) represent a key conservation strategy for addressing human environmental impacts. In 2010 the Parties to the Convention of Biological Diversity (CBD) agreed to Aichi Target 11. Although the quantitative terrestrial coverage of 17% was achieved at a global scale, there has been less progress regarding the other key aspects of the target. Many of the world's PAs remain ineffective, inequitably managed, poorly connected, and are not ecologically representative. Here, we focus on the representativeness aspect to demonstrate that transboundary coordination between countries is essential to achieve this objective. Yet, decisions regarding PAs and their placement are made unilaterally at the national level, resulting in large differences among ecosystems and species in the degree of protection at the regional and global levels. Recognizing and addressing this issue is critical for the implementation of the post-2020 global biodiversity targets—which are to be adopted during the second phase of the CDB's 15th Conference of the Parties (COP 15) in Kunming, China in May 2022. According to the first detailed draft of the post-2020 Global Biodiversity Framework (GBF), the new quantitative coverage target for PAs and other effective area-based conservation measures (OECMs) will likely be set at 30% of the planet to be achieved by 2030. For this to happen, countries will have to expand their protected land significantly; for many, it would mean more than doubling their current network of PAs and OECMs. However, should these expansions continue to occur without transboundary coordination, countries risk creating a global network of PAs that is still not ecologically representative despite its greatly expanded coverage.

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Plant and Cell Physiology, 2021

The plastid genome (plastome) is highly conserved in both gene order and content and has a lower ... more The plastid genome (plastome) is highly conserved in both gene order and content and has a lower mutation rate than the nuclear genome. However, the plastome is more variable in heterotrophic plants. To date, most such studies have investigated just a few species or only holoheterotrophic groups, and few have examined plastome evolution in recently derived lineages at an early stage of transition from autotrophy to heterotrophy. In this study, we investigated the evolutionary dynamics of plastomes in the monophyletic and recently derived Pedicularis sect. Cyathophora (Orobanchaceae). We obtained 22 new plastomes, 13 from the six recognized species of section Cyathophora, six from hemiparasitic relatives and three from autotrophic relatives. Comparative analyses of gene content, plastome structure and selection pressure showed dramatic differences among species in section Cyathophora and in Pedicularis as a whole. In comparison with autotrophic relatives and other Pedicularis spp., w...

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Conservation Biology, 2020

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Biological Conservation, 2021

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Biological Conservation, 2020

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Journal of Systematics and Evolution, 2020

The holly genus, Ilex L., in the monogeneric Aquifoliaceae, is the largest woody dioecious genus ... more The holly genus, Ilex L., in the monogeneric Aquifoliaceae, is the largest woody dioecious genus (>664 spp.), with a near‐cosmopolitan distribution in mesic environments. We constructed a phylogeny based on two nuclear genes, representing 177 species spread across the geographical range, and dated using macrofossil records. The five main clades had a common ancestor in the early Eocene, much earlier than previously suggested. Ilex originated in subtropical Asia and extant clades colonized South America by 30 Ma, North America by 23 Ma, Australia by 8 Ma, Europe by 6 Ma, and Africa by 4 Ma. South and North America were colonized multiple times. Ilex also reached Hawaii (10 Ma) and other oceanic islands. Macrofossil and pollen records show the genus has tracked mesic climates through time and space, and had a wider distribution before late Miocene global cooling. Our phylogeny provides a framework for studies in comparative ecology and evolution.

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Forests, 2020

Research Highlights: The reasons for persistence of forest fragments in human-dominated landscape... more Research Highlights: The reasons for persistence of forest fragments in human-dominated landscapes have rarely been examined, despite their importance in biodiversity and ecosystem services. We determined these reasons for forest fragments on collective land in Xishuangbanna prefecture, southwest China. Background and Objectives: Reconciling economic development with biodiversity conservation has been a major challenge in China’s small tropical land area, where local realities have often been in conflict with national policies. In Xishuangbanna, much of China’s most biodiverse forest area has been replaced by cash crops in recent decades, but numerous small forest fragments remain on collective land. Our objective was to find out why these fragments have not been cleared. Methods: We used a combination of semi-structured interviews with 600 households in 69 villages representing nine ethnic groups and information from key informants. Results: Overall, 64% of individual households re...

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BMC Evolutionary Biology, 2019

Background The genus Ilex (Aquifoliaceae) has a near-cosmopolitan distribution in mesic habitats ... more Background The genus Ilex (Aquifoliaceae) has a near-cosmopolitan distribution in mesic habitats from tropical to temperate lowlands and in alpine forests. It has a high rate of hybridization and plastid capture, and comprises four geographically structured plastid groups. A previous study showed that the plastid rbcL gene, coding for the large subunit of Rubisco, has a particularly high rate of non-synonymous substitutions in Ilex, when compared with other plant lineages. This suggests a strong positive selection on rbcL, involved in yet unknown adaptations. We therefore investigated positive selection on rbcL in 240 Ilex sequences from across the global range. Results The rbcL gene shows a much higher rate of positive selection in Ilex than in any other plant lineage studied so far (> 3000 species) by tests in both PAML and SLR. Most positively selected residues are on the surface of the folded large subunit, suggesting interaction with other subunits and associated chaperones,...

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A key feature of life’s diversity is that some species are common but many more are rare. Nonethe... more A key feature of life’s diversity is that some species are common but many more are rare. Nonetheless, at global scales, we do not know what fraction of biodiversity consists of rare species. Here, we present the largest compilation of global plant species observation data in order to quantify the fraction of Earth’s extant land plant biodiversity that is common versus rare. Tests of different hypotheses for the origin of species commonness and rarity indicates that sampling biases and prominent models such as niche theory and neutral theory cannot account for the observed prevalence of rare species. Instead, the distribution of commonness is best approximated by heavy-tailed distributions like the Pareto or Poisson-lognormal distributions. As a result, a large fraction, ~36.5% of an estimated ~435k total plant species, are exceedingly rare. We also show that rare species tend to cluster in a small number of ‘hotspots’ mainly characterized by being in tropical and subtropical mounta...

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Royal Society Open Science, 2018

The relationship between β-diversity and latitude still remains to be a core question in ecology ... more The relationship between β-diversity and latitude still remains to be a core question in ecology because of the lack of consensus between studies. One hypothesis for the lack of consensus between studies is that spatial scale changes the relationship between latitude and β-diversity. Here, we test this hypothesis using tree data from 15 large-scale forest plots (greater than or equal to 15 ha, diameter at breast height ≥ 1 cm) across a latitudinal gradient (3–30 o ) in the Asia-Pacific region. We found that the observed β-diversity decreased with increasing latitude when sampling local tree communities at small spatial scale (grain size ≤0.1 ha), but the observed β-diversity did not change with latitude when sampling at large spatial scales (greater than or equal to 0.25 ha). Differences in latitudinal β-diversity gradients across spatial scales were caused by pooled species richness (γ-diversity), which influenced observed β-diversity values at small spatial scales, but not at larg...

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Regional Environmental Change, 2019

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Gardens’ Bulletin Singapore, 2018

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Scientific reports, Jan 27, 2018

Our understanding of the patterns of plant diversity in tropical forests and their responses to f... more Our understanding of the patterns of plant diversity in tropical forests and their responses to fragmentation are mostly based on tree surveys. But are these patterns and responses representative of other plant life-forms? We sampled trees, lianas, herbs, and ferns in a fragmented tropical forest landscape in South-west China. We compared community types generated by clustering presence-absence data for the non-tree life-forms with those generated for trees. We tested how well measures of tree diversity, density and composition, predicted cognate indices in other life-forms. We compared fragmentation responses, with respect to the three measures, of all four life-forms. Presence-absence data from all life-forms generated three community clusters, with only small differences between classifications, suggesting that tree data identified community types representative of all vascular plant life-forms. Tree species diversity and density indices poorly predicted cognate indices of lianas...

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Bookmarks Related papers MentionsView impact

Ecosystem Health and Sustainability

Global biodiversity is in crisis as a result of human activity. This biodiversity crisis has been... more Global biodiversity is in crisis as a result of human activity. This biodiversity crisis has been well documented by scientists, recognized by world leaders, politicians, businesses, and citizens. Both the biodiversity and climate crises need to be addressed now. 2020 was when this change was supposed to start, with the 15th Conference of Parties (COP15) of the Convention on Biodiversity (CBD) meeting in Kunming, and the 26th Conference of Parties (COP26) of the UN Framework Convention on Climate Change meeting in Glasgow, but both meetings were postponed. COP26 was held a year late (November 2021), while COP15 was split into two, with the first part held in Kunming in October 2021, and the second part scheduled for Montreal in December 2022. This meeting in Montreal – arguably the most important in the CBDs history – must agree on the Post-2020 Global Biodiversity Framework (GBF), to reverse biodiversity loss. Failure to reach agreement in Montreal would ultimately be a failure of ...

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Scientific Reports, 2022

Although 23% of Thailand’s land is in protected areas, these are vulnerable to climate change. We... more Although 23% of Thailand’s land is in protected areas, these are vulnerable to climate change. We used spatial distribution modelling for 866 vertebrate and 591 plant species to understand potential climate change impacts on species in protected areas. Most mammals, birds, and plants were projected to decline by 2070, but most amphibians and reptiles were projected to increase. By 2070 under RCP8.5, 54% of modeled species will be threatened and 11 nationally extinct. However, SDMs are sensitive to truncation of the climate space currently occupied by habitat loss and hunting, and apparent truncation by data limitations. In Thailand, lowland forest clearance has biased records for forest-dependent species to cooler uplands (> 250 m a.s.l.) and hunting has confined larger vertebrates to well-protected areas. In contrast, available data is biased towards lowland non-forest taxa for amphibians and reptiles. Niche truncation may therefore have resulted in overestimation of vulnerabili...

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Frontiers in Plant Science, 2022

Morphological approaches often fail to delimit species in recently derived species complexes. Thi... more Morphological approaches often fail to delimit species in recently derived species complexes. This can be exacerbated in historical collections which may have lost key features in specimen preparation and preservation. Here, we examine the Pedicularis siphonantha complex, endemic to the Mountains of Southwest China. This complex is characterized by its red/purple/pink and long-tubular corolla, and twisted, beaked galea. However, herbarium specimens are often difficult to identify to species. Molecular approaches using nrITS or nuclear ribosomal internal transcribed spacer (nrITS) + plastid DNA (ptDNA) have been successfully used for species identification in Pedicularis. To resolve taxonomic confusion in the Pedicularis siphonantha complex, we reconstructed phylogenies of the complex using nrITS and four plastid DNA loci (matK, rbcL, trnH-psbA, and trnL-F). To recover as much of the phylogenetic history as possible, we sampled individuals at the population level. Topological incongr...

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Epiphytic communities live in a unique, three-dimensional micro-habitat space that offers an orig... more Epiphytic communities live in a unique, three-dimensional micro-habitat space that offers an original framework to disentangle the contribution of environmental filters, biotic interactions and dispersal limitation to community structure at small spatial scales. We took advantage of a tropical canopy crane facility to record and model spatio-temporal microclimatic variation and assess its impact on the composition and phylogenetic structure of epiphytic bryophyte communities. Generalized Dissimilarity Modelling evidenced the crucial role of microclimates in determining the composition of moss and liverwort communities. The shift between negative or non-significant phylogenetic turnover to consistently significant clustering from the base to the canopy suggests that phylogenetic constraints further contribute to shape the assembly of epiphytic bryophyte communities. The slight, but significant correlation between increasing phylogenetic clustering with variation in microclimatic cond...

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Horticulture Research, 2022

Southwest China is a plant diversity hotspot. The near-cosmopolitan genus Ilex (c. 664 spp., Aqui... more Southwest China is a plant diversity hotspot. The near-cosmopolitan genus Ilex (c. 664 spp., Aquifoliaceae) reaches its maximum diversity in this region, with many narrow-range and a few widespread species. Divergent selection on widespread species leads to local adaptation, with consequences for both conservation and utilization, but is counteracted by geneflow. Many Ilex species are utilized as teas, medicines, ornamentals, honey plants, and timber, but variation below the species level is largely uninvestigated. We therefore studied the widespread Ilex polyneura, which occupies most of the elevational range available and is cultivated for its decorative leafless branches with persistent red fruits. We assembled a chromosome-scale genome using approximately 100x whole genome long-read and short-read sequencing combined with Hi-C sequencing. The genome is approximately 727.1 Mb, with a contig N50 size of 5 124 369 bp and a scaffold N50 size of 36 593 620 bp, for which the BUSCO sco...

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Forests, 2022

The hollies (Ilex L., Aquifoliaceae) form a large (>669 spp.) genus of forest trees and shrubs... more The hollies (Ilex L., Aquifoliaceae) form a large (>669 spp.) genus of forest trees and shrubs, which is almost cosmopolitan in mesic environments but most diverse in subtropical China and montane South America. Throughout the range of the genus, Ilex species have been utilized as beverages, medicines, ornamentals, honey plants, timber, and for various other minor uses. Recent studies on the genomics, evolution, and biogeography of Ilex now make it possible to take a systematic approach to understanding and expanding the economic importance of the genus, but information on existing uses is scattered among numerous published and unpublished sources. We therefore review the existing literature on utilization of Ilex species, supplementing this with information from the grey literature and product websites. We show that, despite the number and diversity of known uses, most Ilex species are not known to be utilized at present, suggesting considerable unrealized potential. We highligh...

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Environmental Research Letters, 2021

People are now impacting the natural environment at an unparalleled scale. The Intergovernmental ... more People are now impacting the natural environment at an unparalleled scale. The Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) warns that up to one million species may be threatened with extinction. Protected areas (PAs) represent a key conservation strategy for addressing human environmental impacts. In 2010 the Parties to the Convention of Biological Diversity (CBD) agreed to Aichi Target 11. Although the quantitative terrestrial coverage of 17% was achieved at a global scale, there has been less progress regarding the other key aspects of the target. Many of the world's PAs remain ineffective, inequitably managed, poorly connected, and are not ecologically representative. Here, we focus on the representativeness aspect to demonstrate that transboundary coordination between countries is essential to achieve this objective. Yet, decisions regarding PAs and their placement are made unilaterally at the national level, resulting in large differences among ecosystems and species in the degree of protection at the regional and global levels. Recognizing and addressing this issue is critical for the implementation of the post-2020 global biodiversity targets—which are to be adopted during the second phase of the CDB's 15th Conference of the Parties (COP 15) in Kunming, China in May 2022. According to the first detailed draft of the post-2020 Global Biodiversity Framework (GBF), the new quantitative coverage target for PAs and other effective area-based conservation measures (OECMs) will likely be set at 30% of the planet to be achieved by 2030. For this to happen, countries will have to expand their protected land significantly; for many, it would mean more than doubling their current network of PAs and OECMs. However, should these expansions continue to occur without transboundary coordination, countries risk creating a global network of PAs that is still not ecologically representative despite its greatly expanded coverage.

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Plant and Cell Physiology, 2021

The plastid genome (plastome) is highly conserved in both gene order and content and has a lower ... more The plastid genome (plastome) is highly conserved in both gene order and content and has a lower mutation rate than the nuclear genome. However, the plastome is more variable in heterotrophic plants. To date, most such studies have investigated just a few species or only holoheterotrophic groups, and few have examined plastome evolution in recently derived lineages at an early stage of transition from autotrophy to heterotrophy. In this study, we investigated the evolutionary dynamics of plastomes in the monophyletic and recently derived Pedicularis sect. Cyathophora (Orobanchaceae). We obtained 22 new plastomes, 13 from the six recognized species of section Cyathophora, six from hemiparasitic relatives and three from autotrophic relatives. Comparative analyses of gene content, plastome structure and selection pressure showed dramatic differences among species in section Cyathophora and in Pedicularis as a whole. In comparison with autotrophic relatives and other Pedicularis spp., w...

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Conservation Biology, 2020

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Biological Conservation, 2021

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Biological Conservation, 2020

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Journal of Systematics and Evolution, 2020

The holly genus, Ilex L., in the monogeneric Aquifoliaceae, is the largest woody dioecious genus ... more The holly genus, Ilex L., in the monogeneric Aquifoliaceae, is the largest woody dioecious genus (>664 spp.), with a near‐cosmopolitan distribution in mesic environments. We constructed a phylogeny based on two nuclear genes, representing 177 species spread across the geographical range, and dated using macrofossil records. The five main clades had a common ancestor in the early Eocene, much earlier than previously suggested. Ilex originated in subtropical Asia and extant clades colonized South America by 30 Ma, North America by 23 Ma, Australia by 8 Ma, Europe by 6 Ma, and Africa by 4 Ma. South and North America were colonized multiple times. Ilex also reached Hawaii (10 Ma) and other oceanic islands. Macrofossil and pollen records show the genus has tracked mesic climates through time and space, and had a wider distribution before late Miocene global cooling. Our phylogeny provides a framework for studies in comparative ecology and evolution.

Bookmarks Related papers MentionsView impact

Forests, 2020

Research Highlights: The reasons for persistence of forest fragments in human-dominated landscape... more Research Highlights: The reasons for persistence of forest fragments in human-dominated landscapes have rarely been examined, despite their importance in biodiversity and ecosystem services. We determined these reasons for forest fragments on collective land in Xishuangbanna prefecture, southwest China. Background and Objectives: Reconciling economic development with biodiversity conservation has been a major challenge in China’s small tropical land area, where local realities have often been in conflict with national policies. In Xishuangbanna, much of China’s most biodiverse forest area has been replaced by cash crops in recent decades, but numerous small forest fragments remain on collective land. Our objective was to find out why these fragments have not been cleared. Methods: We used a combination of semi-structured interviews with 600 households in 69 villages representing nine ethnic groups and information from key informants. Results: Overall, 64% of individual households re...

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BMC Evolutionary Biology, 2019

Background The genus Ilex (Aquifoliaceae) has a near-cosmopolitan distribution in mesic habitats ... more Background The genus Ilex (Aquifoliaceae) has a near-cosmopolitan distribution in mesic habitats from tropical to temperate lowlands and in alpine forests. It has a high rate of hybridization and plastid capture, and comprises four geographically structured plastid groups. A previous study showed that the plastid rbcL gene, coding for the large subunit of Rubisco, has a particularly high rate of non-synonymous substitutions in Ilex, when compared with other plant lineages. This suggests a strong positive selection on rbcL, involved in yet unknown adaptations. We therefore investigated positive selection on rbcL in 240 Ilex sequences from across the global range. Results The rbcL gene shows a much higher rate of positive selection in Ilex than in any other plant lineage studied so far (> 3000 species) by tests in both PAML and SLR. Most positively selected residues are on the surface of the folded large subunit, suggesting interaction with other subunits and associated chaperones,...

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A key feature of life’s diversity is that some species are common but many more are rare. Nonethe... more A key feature of life’s diversity is that some species are common but many more are rare. Nonetheless, at global scales, we do not know what fraction of biodiversity consists of rare species. Here, we present the largest compilation of global plant species observation data in order to quantify the fraction of Earth’s extant land plant biodiversity that is common versus rare. Tests of different hypotheses for the origin of species commonness and rarity indicates that sampling biases and prominent models such as niche theory and neutral theory cannot account for the observed prevalence of rare species. Instead, the distribution of commonness is best approximated by heavy-tailed distributions like the Pareto or Poisson-lognormal distributions. As a result, a large fraction, ~36.5% of an estimated ~435k total plant species, are exceedingly rare. We also show that rare species tend to cluster in a small number of ‘hotspots’ mainly characterized by being in tropical and subtropical mounta...

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Royal Society Open Science, 2018

The relationship between β-diversity and latitude still remains to be a core question in ecology ... more The relationship between β-diversity and latitude still remains to be a core question in ecology because of the lack of consensus between studies. One hypothesis for the lack of consensus between studies is that spatial scale changes the relationship between latitude and β-diversity. Here, we test this hypothesis using tree data from 15 large-scale forest plots (greater than or equal to 15 ha, diameter at breast height ≥ 1 cm) across a latitudinal gradient (3–30 o ) in the Asia-Pacific region. We found that the observed β-diversity decreased with increasing latitude when sampling local tree communities at small spatial scale (grain size ≤0.1 ha), but the observed β-diversity did not change with latitude when sampling at large spatial scales (greater than or equal to 0.25 ha). Differences in latitudinal β-diversity gradients across spatial scales were caused by pooled species richness (γ-diversity), which influenced observed β-diversity values at small spatial scales, but not at larg...

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Regional Environmental Change, 2019

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Gardens’ Bulletin Singapore, 2018

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Scientific reports, Jan 27, 2018

Our understanding of the patterns of plant diversity in tropical forests and their responses to f... more Our understanding of the patterns of plant diversity in tropical forests and their responses to fragmentation are mostly based on tree surveys. But are these patterns and responses representative of other plant life-forms? We sampled trees, lianas, herbs, and ferns in a fragmented tropical forest landscape in South-west China. We compared community types generated by clustering presence-absence data for the non-tree life-forms with those generated for trees. We tested how well measures of tree diversity, density and composition, predicted cognate indices in other life-forms. We compared fragmentation responses, with respect to the three measures, of all four life-forms. Presence-absence data from all life-forms generated three community clusters, with only small differences between classifications, suggesting that tree data identified community types representative of all vascular plant life-forms. Tree species diversity and density indices poorly predicted cognate indices of lianas...

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