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Papers by G. Cottone

Research paper thumbnail of Proteins in amorphous saccharide matrices: Structural and dynamical insights on bioprotection

The European Physical Journal E, 2013

Bioprotection by sugars, and in particular trehalose peculiarity, is a relevant topic due to the ... more Bioprotection by sugars, and in particular trehalose peculiarity, is a relevant topic due to the implications in several fields. The underlying mechanisms are not yet clearly elucidated, and remain the focus of current investigations. Here we revisit data obtained at our lab on binary sugar/water and ternary protein/sugar/water systems, in wide ranges of water content and temperature, in the light of the current literature. The data here discussed come from complementary techniques (Infrared Spectroscopy, Molecular Dynamics simulations, Small Angle X-ray Scattering and Calorimetry), which provided a consistent description of the bioprotection by sugars from the atomistic to the macroscopic level. We present a picture, which suggests that protein bioprotection can be explained in terms of a strong coupling of the biomolecule surface to the matrix via extended hydrogen-bond networks, whose properties are defined by all components of the systems, and are strongly dependent on water content. Furthermore, the data show how carbohydrates having similar hydrogen-bonding capabilities exhibit different efficiency in preserving biostructures.

Research paper thumbnail of GFP-mut2 Proteins in Trehalose-Water Matrixes: Spatially Heterogeneous Protein-Water-Sugar Structures

Biophysical Journal, 2007

We report investigations on the properties of nanoenvironments around single-GFP-mut2 proteins in... more We report investigations on the properties of nanoenvironments around single-GFP-mut2 proteins in trehalosewater matrixes. Single-GFPmut2 molecules embedded in thin trehalose-water films were characterized in terms of their fluorescence brightness, bleaching dynamics, excited state lifetime, and fluorescence polarization. For each property, sets of ;100-150 single molecules have been investigated as a function of trehalose content and hydration. Three distinct and interconverting families of proteins have been found which differ widely in terms of bleaching dynamics, brightness, and fluorescence polarization, whose relative populations sizably depend on sample hydration. The reported results evidence the simultaneous presence of different protein-trehalose-water nanostructures whose rigidity increases by lowering the sample hydration. Such spatial inhomogeneity is in line with the well-known heterogeneous dynamics in supercooled fluids and in nonsolid carbohydrate glasses and gives a pictorial representation of the sharp, sudden reorganization of the above structures after uptake $ release of water molecules.

Research paper thumbnail of Solute-solute solvent-induced interaction: molecular dynamics simulation of a mixed model system in water

Chemical Physics Letters, 1995

Solute-solute solvent-induced interaction: molecular simulation of d model system in water ottone... more Solute-solute solvent-induced interaction: molecular simulation of d model system in water ottone ", S.L. Fornili avb

Research paper thumbnail of Proteins in amorphous saccharide matrices: Structural and dynamical insights on bioprotection

The European Physical Journal E, 2013

Bioprotection by sugars, and in particular trehalose peculiarity, is a relevant topic due to the ... more Bioprotection by sugars, and in particular trehalose peculiarity, is a relevant topic due to the implications in several fields. The underlying mechanisms are not yet clearly elucidated, and remain the focus of current investigations. Here we revisit data obtained at our lab on binary sugar/water and ternary protein/sugar/water systems, in wide ranges of water content and temperature, in the light of the current literature. The data here discussed come from complementary techniques (Infrared Spectroscopy, Molecular Dynamics simulations, Small Angle X-ray Scattering and Calorimetry), which provided a consistent description of the bioprotection by sugars from the atomistic to the macroscopic level. We present a picture, which suggests that protein bioprotection can be explained in terms of a strong coupling of the biomolecule surface to the matrix via extended hydrogen-bond networks, whose properties are defined by all components of the systems, and are strongly dependent on water content. Furthermore, the data show how carbohydrates having similar hydrogen-bonding capabilities exhibit different efficiency in preserving biostructures.

Research paper thumbnail of GFP-mut2 Proteins in Trehalose-Water Matrixes: Spatially Heterogeneous Protein-Water-Sugar Structures

Biophysical Journal, 2007

We report investigations on the properties of nanoenvironments around single-GFP-mut2 proteins in... more We report investigations on the properties of nanoenvironments around single-GFP-mut2 proteins in trehalosewater matrixes. Single-GFPmut2 molecules embedded in thin trehalose-water films were characterized in terms of their fluorescence brightness, bleaching dynamics, excited state lifetime, and fluorescence polarization. For each property, sets of ;100-150 single molecules have been investigated as a function of trehalose content and hydration. Three distinct and interconverting families of proteins have been found which differ widely in terms of bleaching dynamics, brightness, and fluorescence polarization, whose relative populations sizably depend on sample hydration. The reported results evidence the simultaneous presence of different protein-trehalose-water nanostructures whose rigidity increases by lowering the sample hydration. Such spatial inhomogeneity is in line with the well-known heterogeneous dynamics in supercooled fluids and in nonsolid carbohydrate glasses and gives a pictorial representation of the sharp, sudden reorganization of the above structures after uptake $ release of water molecules.

Research paper thumbnail of Solute-solute solvent-induced interaction: molecular dynamics simulation of a mixed model system in water

Chemical Physics Letters, 1995

Solute-solute solvent-induced interaction: molecular simulation of d model system in water ottone... more Solute-solute solvent-induced interaction: molecular simulation of d model system in water ottone ", S.L. Fornili avb

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