Hajir Omer - Academia.edu (original) (raw)

Papers by Hajir Omer

Research paper thumbnail of Oral Candidiasis in HIV Patients Subjected to Anti-retro Viral Therapy (ART) in Wad Medani HIV Center, Gezira State, Sudan (2021)

International Journal of TROPICAL DISEASE & Health

Background: Oral candidiasis is the most common fungal infection in immune compromised individual... more Background: Oral candidiasis is the most common fungal infection in immune compromised individuals such as AIDS patients. Candida albicans alone is responsible of more than 95% of candidiasis. The increase prevalence of oral candidiasis among African HIV infected people has resulted in increased in usage of antifungal agents for both prophylactic and treatment purposes. This study aimed to detect oral candidiasis in HIV patients subjected to ART. Methods: In Wad Medani HIV center, Central Sudan, a total of 100 participants were enrolled, oral swabs were collected and processed immediately by culturing on potatoes dextrose agar (PDA), Candida species were identified on the base of morphology, germ tube test and chlamydospres formation and the participants were categorized according the WHO classification of viral stages into I, II, III and IV. Demographic data was obtained by questionnaire and analyzed by SPSS program version 21. IBM Chicago. Results: Theresults obtai...

Research paper thumbnail of Incidence of Oxa23 and Oxa51 Genes Associated with Bacterial Isolated from Patients with Urosepsis: Single Centre Prespective

American Journal of Molecular Biology

Research paper thumbnail of Urosepsis among Sudanese Patients: A Paradigm from Limited Resources Country

Research paper thumbnail of Giemsa stain for C.trachomatis

Giemsa stain, Urine sample, C.trachomatis

Research paper thumbnail of Cytological and Molecular Screening of Chlamydia trachomatis in infertile women-Sudan .xlsx

This data set includes demographic, clinical data, result of Giemsa staining and molecular test f... more This data set includes demographic, clinical data, result of Giemsa staining and molecular test for urine and high vaginal swab of infertile Sudanese women screened for <i>Chlamydia trachomatis.</i>

Research paper thumbnail of Untitled Item(extended data) Cytological and molecular screening of Chlamydia trachomatis in infertile women- Sudan

This file contain the questionnaire used to collect the demographic data, clinical data and also ... more This file contain the questionnaire used to collect the demographic data, clinical data and also as a document to the laboratory result.

Research paper thumbnail of PCR amplification product of C.trachomatis DNA

Research paper thumbnail of (extended data) Cytological and molecular screening of Chlamydia trachomatis in infertile women- Sudan

This file contain the questionnaire used to collect the demographic data, clinical data and also ... more This file contain the questionnaire used to collect the demographic data, clinical data and also as a document to the laboratory result.

Research paper thumbnail of CYTOLOGICAL AND MOLECULAR SCREENING OF CT IN INFERTILE WOMEN-SUDAN.xlsx

This data set includes demographic, clinical data, result of Giemsa staining and molecular test f... more This data set includes demographic, clinical data, result of Giemsa staining and molecular test for urine and high vaginal swab of infertile Sudanese women screened for <i>Chlamydia trachomatis.</i>

Research paper thumbnail of Cytological and molecular screening of Chlamydia trachomatis in infertile women attending a maternity teaching hospital in Gezira State, Sudan: a cross-sectional study

F1000Research

Background: Chlamydia trachomatis (CT) is a sexually transmitted pathogen that threatens reproduc... more Background: Chlamydia trachomatis (CT) is a sexually transmitted pathogen that threatens reproductive health worldwide. This study aims to screen CT urogenital infection using cytology and molecular methods in women suffering infertility. Methods: In total, 415 women suffering infertility, attending Wad Madani Maternity Hospital were included in this study and then classified into two groups: primary infertile women and secondary infertile women. Both urine (n= 415) and vaginal swab samples (n= 130) were collected and tested using Giemsa stain and Polymerase Chain Reaction (PCR) for detection of CT. Results: CT was detected in 33.7% (140/415) of urine samples and 73.1% (95/130) of vaginal swab samples using Giemsa stain, compared with 44.6% (185/415) and 84.6% (110/130) using PCR, respectively. In the primary infertile group (n= 265), chlamydia was detected in 35.8% (95/265) of urine and 75% (60/80) of swab samples by Giemsa stain compared with 50.9% (135/265) and 75% (60/80) of the...

Research paper thumbnail of Cytological, Serological and Molecular Detection of Chlamydia trachomatis among Women attending Wad Medani Maternity Teaching Hospital, Gezira State, Sudan (2015-2018)

A Thesis Submitted to the University of Gezira in Fulfillment of the Requirements for the award o... more A Thesis Submitted to the University of Gezira in Fulfillment of the Requirements for the award of the Degree of Doctor of Philosophy in Medical Microbiology Department of Medical Microbiology Faculty of Medical Laboratory Sciences May 2018

Research paper thumbnail of Cytological and molecular screening of Chlamydia trachomatis in infertile women attending a maternity teaching hospital in Gezira State, Sudan: a cross-sectional study

F1000Research

Background: Chlamydia trachomatis (CT) is a sexually transmitted pathogen that threatens reproduc... more Background: Chlamydia trachomatis (CT) is a sexually transmitted pathogen that threatens reproductive health worldwide. This study aims to screen CT urogenital infection using cytology and molecular methods in women suffering infertility. Methods: In total, 415 women suffering infertility, attending Wad Madani Maternity Hospital were included in this study and then classified into two groups: primary infertile women and secondary infertile women. Both urine (n= 415) and vaginal swab samples (n= 130) were collected and tested using Giemsa stain and Polymerase Chain Reaction (PCR) for detection of CT. Results: CT was detected in 33.7% (140/415) of urine samples and 73.1% (95/130) of vaginal swab samples using Giemsa stain, compared with 44.6% (185/415) and 84.6% (110/130) using PCR, respectively. In the primary infertile group (n= 265), chlamydia was detected in 35.8% (95/265) of urine and 75% (60/80) of swab samples by Giemsa stain compared with 50.9% (135/265) and 75% (60/80) of the...

Research paper thumbnail of Oral Candidiasis in HIV Patients Subjected to Anti-retro Viral Therapy (ART) in Wad Medani HIV Center, Gezira State, Sudan (2021)

International Journal of TROPICAL DISEASE & Health

Background: Oral candidiasis is the most common fungal infection in immune compromised individual... more Background: Oral candidiasis is the most common fungal infection in immune compromised individuals such as AIDS patients. Candida albicans alone is responsible of more than 95% of candidiasis. The increase prevalence of oral candidiasis among African HIV infected people has resulted in increased in usage of antifungal agents for both prophylactic and treatment purposes. This study aimed to detect oral candidiasis in HIV patients subjected to ART. Methods: In Wad Medani HIV center, Central Sudan, a total of 100 participants were enrolled, oral swabs were collected and processed immediately by culturing on potatoes dextrose agar (PDA), Candida species were identified on the base of morphology, germ tube test and chlamydospres formation and the participants were categorized according the WHO classification of viral stages into I, II, III and IV. Demographic data was obtained by questionnaire and analyzed by SPSS program version 21. IBM Chicago. Results: Theresults obtai...

Research paper thumbnail of Incidence of Oxa23 and Oxa51 Genes Associated with Bacterial Isolated from Patients with Urosepsis: Single Centre Prespective

American Journal of Molecular Biology

Research paper thumbnail of Urosepsis among Sudanese Patients: A Paradigm from Limited Resources Country

Research paper thumbnail of Giemsa stain for C.trachomatis

Giemsa stain, Urine sample, C.trachomatis

Research paper thumbnail of Cytological and Molecular Screening of Chlamydia trachomatis in infertile women-Sudan .xlsx

This data set includes demographic, clinical data, result of Giemsa staining and molecular test f... more This data set includes demographic, clinical data, result of Giemsa staining and molecular test for urine and high vaginal swab of infertile Sudanese women screened for <i>Chlamydia trachomatis.</i>

Research paper thumbnail of Untitled Item(extended data) Cytological and molecular screening of Chlamydia trachomatis in infertile women- Sudan

This file contain the questionnaire used to collect the demographic data, clinical data and also ... more This file contain the questionnaire used to collect the demographic data, clinical data and also as a document to the laboratory result.

Research paper thumbnail of PCR amplification product of C.trachomatis DNA

Research paper thumbnail of (extended data) Cytological and molecular screening of Chlamydia trachomatis in infertile women- Sudan

This file contain the questionnaire used to collect the demographic data, clinical data and also ... more This file contain the questionnaire used to collect the demographic data, clinical data and also as a document to the laboratory result.

Research paper thumbnail of CYTOLOGICAL AND MOLECULAR SCREENING OF CT IN INFERTILE WOMEN-SUDAN.xlsx

This data set includes demographic, clinical data, result of Giemsa staining and molecular test f... more This data set includes demographic, clinical data, result of Giemsa staining and molecular test for urine and high vaginal swab of infertile Sudanese women screened for <i>Chlamydia trachomatis.</i>

Research paper thumbnail of Cytological and molecular screening of Chlamydia trachomatis in infertile women attending a maternity teaching hospital in Gezira State, Sudan: a cross-sectional study

F1000Research

Background: Chlamydia trachomatis (CT) is a sexually transmitted pathogen that threatens reproduc... more Background: Chlamydia trachomatis (CT) is a sexually transmitted pathogen that threatens reproductive health worldwide. This study aims to screen CT urogenital infection using cytology and molecular methods in women suffering infertility. Methods: In total, 415 women suffering infertility, attending Wad Madani Maternity Hospital were included in this study and then classified into two groups: primary infertile women and secondary infertile women. Both urine (n= 415) and vaginal swab samples (n= 130) were collected and tested using Giemsa stain and Polymerase Chain Reaction (PCR) for detection of CT. Results: CT was detected in 33.7% (140/415) of urine samples and 73.1% (95/130) of vaginal swab samples using Giemsa stain, compared with 44.6% (185/415) and 84.6% (110/130) using PCR, respectively. In the primary infertile group (n= 265), chlamydia was detected in 35.8% (95/265) of urine and 75% (60/80) of swab samples by Giemsa stain compared with 50.9% (135/265) and 75% (60/80) of the...

Research paper thumbnail of Cytological, Serological and Molecular Detection of Chlamydia trachomatis among Women attending Wad Medani Maternity Teaching Hospital, Gezira State, Sudan (2015-2018)

A Thesis Submitted to the University of Gezira in Fulfillment of the Requirements for the award o... more A Thesis Submitted to the University of Gezira in Fulfillment of the Requirements for the award of the Degree of Doctor of Philosophy in Medical Microbiology Department of Medical Microbiology Faculty of Medical Laboratory Sciences May 2018

Research paper thumbnail of Cytological and molecular screening of Chlamydia trachomatis in infertile women attending a maternity teaching hospital in Gezira State, Sudan: a cross-sectional study

F1000Research

Background: Chlamydia trachomatis (CT) is a sexually transmitted pathogen that threatens reproduc... more Background: Chlamydia trachomatis (CT) is a sexually transmitted pathogen that threatens reproductive health worldwide. This study aims to screen CT urogenital infection using cytology and molecular methods in women suffering infertility. Methods: In total, 415 women suffering infertility, attending Wad Madani Maternity Hospital were included in this study and then classified into two groups: primary infertile women and secondary infertile women. Both urine (n= 415) and vaginal swab samples (n= 130) were collected and tested using Giemsa stain and Polymerase Chain Reaction (PCR) for detection of CT. Results: CT was detected in 33.7% (140/415) of urine samples and 73.1% (95/130) of vaginal swab samples using Giemsa stain, compared with 44.6% (185/415) and 84.6% (110/130) using PCR, respectively. In the primary infertile group (n= 265), chlamydia was detected in 35.8% (95/265) of urine and 75% (60/80) of swab samples by Giemsa stain compared with 50.9% (135/265) and 75% (60/80) of the...