Xiaolin Nan | Oregon Health & Science University (original) (raw)

Papers by Xiaolin Nan

Research paper thumbnail of Organelle Tracking in a Living Cell with Microsecond Time Resolution and Nanometer Spatial Precision

ChemPhysChem, Mar 27, 2008

Research paper thumbnail of Cover Picture: Organelle Tracking in a Living Cell with Microsecond Time Resolution and Nanometer Spatial Precision (ChemPhysChem 5/2008)

ChemPhysChem, Mar 27, 2008

Research paper thumbnail of Intracellular Imaging of HCV RNA and Cellular Lipids by Using Simultaneous Two-Photon Fluorescence and Coherent Anti-Stokes Raman Scattering Microscopies

ChemBioChem, Oct 27, 2006

Research paper thumbnail of Observation of Individual Microtubule Motor Steps in Living Cells with Endocytosed Quantum Dots

Journal of Physical Chemistry B, Dec 1, 2005

Research paper thumbnail of Crosstalk between invadopodia and the extracellular matrix

bioRxiv (Cold Spring Harbor Laboratory), Feb 27, 2020

Research paper thumbnail of CARS microscopy: Coming of age

Research paper thumbnail of Nanoscopic Spatial Association between Ras and Phosphatidylserine on the Cell Membrane Studied with Multicolor Super Resolution Microscopy

Biomolecules, Jul 26, 2022

Research paper thumbnail of A Versatile Synthetic Pathway for Producing Mesostructured Plasmonic Nanostructures

Small, Oct 21, 2022

Highly branched gold (Au) nanostructures with sharp tips are considered excellent substrates for ... more Highly branched gold (Au) nanostructures with sharp tips are considered excellent substrates for surface‐enhanced Raman scattering (SERS)‐based sensing technologies. Here, a simple synthetic route for producing Au or Au‐Ag bimetallic mesostructures with multiple sharpened tips in the presence of carbon quantum dots (CQDs) is presented. The morphologies of these mesostructured plasmonic nanoparticles (MSPNs) can be controlled by adjusting the concentration of CQDs, reaction temperatures, and seed particles. The optimal molar ratio for [HAuCl4]/[CQDs] is found to be ≈25. At this molar ratio, the diameters of MSPNs can be tuned from 80 to 200 nm by changing the reaction temperature from 25 to 80 °C. In addition, it is found that hierarchical MSPNs consisting of multiple Au nanocrystals can be formed over the entire seed particle surface. Finally, the SERS activity of these MSPNs is examined through the detection of rhodamine 6G and methylene blue. Of the different mesostructures, the bimetallic MSPNs have the highest sensitivity with the ability to detect 10−7 m of rhodamine 6G and 10−6 m of methylene blue. The properties of these MSPN particles, made using a novel synthetic process, make them excellent candidates for SERS‐based chemical sensing applications.

Research paper thumbnail of CARS microscopy lights up lipids in living cells

these techniques, imaging with chemical selectivity in unstained samples. CARS microscopy is a no... more these techniques, imaging with chemical selectivity in unstained samples. CARS microscopy is a nonlinear imaging technique that produces images of chemical species based on their vibra-tional signatures. The past five years have seen advances in both the understanding of the method's contrast mechanism and the available instrumentation. 1 Conventional laser scanning microscopes can rou-B iologists desire imaging techniques that provide contrast with high sensitivity and selectivity but without altering the sample. Fluorescence mi-croscopy has high sensitivity, but dyes can alter the sample. Phase-contrast and differential-interference-contrast microscopes avoid this problem at the cost of chemical specificity. Coherent anti-Stokes Raman scattering (CARS) microscopy fits CARS Microscopy Lights Up Lipids in Living Cells tinely carry out these imaging experiments with benign excitation powers of 1 to 2 mW and image acquisition rates up to that of video. The technique is shedding light on many emerging and exciting biological applications. Among the chemical species that it has revealed in living cells, 2 lipids provide the best contrast, offering great potential to augment biomedical research in lipid-related diseases such as obesity and atherosclerosis. CARS microscopy relies on the Raman effect. In the spontaneous Raman process, molecules scatter photons, modifying the photon energy with energy quanta that corresponds to the molecules' vibrational modes. Hence, spontaneous Raman LIVE-CELL IMAGING Figure. 1. In Raman scattering processes, incoming light changes frequency according to a vibrational frequency (Ω) of the molecules. Red-and blue-shifted components are termed Stokes and anti-Stokes lines, respectively. In spontaneous Raman (A), thermally driven and random-phased molecular vibrations cause inefficient scattering in all directions. In coherent anti-Stokes Raman scattering (B), two excitation beams at frequencies ω p and ω s form a beating field with frequency ω p Ϫ ω s. When ω p Ϫ ω s matches Ω, the molecular vibrations occur in-phase and efficiently, resulting in a strong directional signal.

Research paper thumbnail of Toward the Chemistry of Carboxylic Single-Walled Carbon Nanotubes by Chemical Force Microscopy

Journal of Physical Chemistry B, Mar 30, 2002

Research paper thumbnail of Accelerating 3B single-molecule super-resolution microscopy with cloud computing

Nature Methods, Jan 30, 2013

Research paper thumbnail of Peroxisome Proliferator-Activated Receptor α Antagonism Inhibits Hepatitis C Virus Replication

Chemistry & Biology, 2006

Hepatitis C virus (HCV) is a global health problem and a leading cause of liver disease. Here, we... more Hepatitis C virus (HCV) is a global health problem and a leading cause of liver disease. Here, we demonstrate that the replication of HCV replicon RNA in Huh-7 cells is inhibited by a peroxisome proliferator-activated receptor (PPAR) antagonist, 2-chloro-5-nitro-N-(pyridyl)benzamide (BA). Downregulation of PPARgamma with RNA interference approaches had no effect on HCV replication in Huh-7 cells, whereas PPARalpha downregulation inhibited HCV replication. Fluorescence and coherent anti-Stokes Raman scattering (CARS) microscopy demonstrate a clear buildup of lipids upon treatment with BA. These observations are consistent with the misregulation of lipid metabolism, phospholipid secretion, cholesterol catabolism, and triglyceride clearance events associated with the inhibition of PPARalpha. The inhibition of HCV replication by BA may result from disrupting lipidation of host proteins associated with the HCV replication complex or, more generally, by disrupting the membranous web where HCV replicates.

Research paper thumbnail of Chemically Assembled Single-Wall Carbon Nanotubes and their Electrochemistry

ChemPhysChem, Oct 18, 2002

Research paper thumbnail of Studying Ras Nanocluster Formation on the Cell Membrane with Correlative Superresolution and Electron Microscopies

Microscopy and Microanalysis, Aug 1, 2019

Research paper thumbnail of Immobilizing Shortened Single-Walled Carbon Nanotubes (SWNTs) on Gold Using a Surface Condensation Method

Journal of Colloid and Interface Science, 2002

Research paper thumbnail of Subcellular Targeted Nanohoop for One- and Two-Photon Live Cell Imaging

ACS Nano, Sep 2, 2021

Fluorophores are powerful tools for interrogating biological systems. Carbon nanotubes (CNTs) hav... more Fluorophores are powerful tools for interrogating biological systems. Carbon nanotubes (CNTs) have long been attractive materials for biological imaging due to their near-infrared excitation and bright, tunable optical properties. The difficulty in synthesizing and functionalizing these materials with precision, however, has hampered progress in this area. Carbon nanohoops, which are macrocyclic CNT substructures, are carbon nanostructures that possess ideal photophysical characteristics of nanomaterials, while maintaining the precise synthesis of small molecules. However, much work remains to advance the nanohoop class of fluorophores as biological imaging agents. Herein, we report an intracellular targeted nanohoop. This fluorescent nanostructure is noncytotoxic at concentrations up to 50 μM, and cellular uptake investigations indicate internalization through endocytic pathways. Additionally, we employ this nanohoop for two-photon fluorescence imaging, demonstrating a high two-photon absorption cross-section (65 GM) and photostability comparable to a commercial probe. This work further motivates continued investigations into carbon nanohoop photophysics and their biological imaging applications.

Research paper thumbnail of Cancer Theranostics: Myeloid-Derived Suppressor Cell Membrane-Coated Magnetic Nanoparticles for Cancer Theranostics by Inducing Macrophage Polarization and Synergizing Immunogenic Cell Death (Adv. Funct. Mater. 37/2018)

Advanced Functional Materials, Sep 1, 2018

Research paper thumbnail of Critical Behavior of Subcellular Density Organization During Neutrophil Activation and Migration

Cellular and Molecular Bioengineering, Jun 3, 2015

Research paper thumbnail of Myeloid-Derived Suppressor Cell Membrane-Coated Magnetic Nanoparticles for Cancer Theranostics by Inducing Macrophage Polarization and Synergizing Immunogenic Cell Death

Advanced Functional Materials, Jul 24, 2018

Research paper thumbnail of Fast and Multiplexed Super Resolution Imaging of Fixed and Immunostained Cells with DNA‐PAINT‐ERS

Current protocols, Nov 1, 2022

Research paper thumbnail of Organelle Tracking in a Living Cell with Microsecond Time Resolution and Nanometer Spatial Precision

ChemPhysChem, Mar 27, 2008

Research paper thumbnail of Cover Picture: Organelle Tracking in a Living Cell with Microsecond Time Resolution and Nanometer Spatial Precision (ChemPhysChem 5/2008)

ChemPhysChem, Mar 27, 2008

Research paper thumbnail of Intracellular Imaging of HCV RNA and Cellular Lipids by Using Simultaneous Two-Photon Fluorescence and Coherent Anti-Stokes Raman Scattering Microscopies

ChemBioChem, Oct 27, 2006

Research paper thumbnail of Observation of Individual Microtubule Motor Steps in Living Cells with Endocytosed Quantum Dots

Journal of Physical Chemistry B, Dec 1, 2005

Research paper thumbnail of Crosstalk between invadopodia and the extracellular matrix

bioRxiv (Cold Spring Harbor Laboratory), Feb 27, 2020

Research paper thumbnail of CARS microscopy: Coming of age

Research paper thumbnail of Nanoscopic Spatial Association between Ras and Phosphatidylserine on the Cell Membrane Studied with Multicolor Super Resolution Microscopy

Biomolecules, Jul 26, 2022

Research paper thumbnail of A Versatile Synthetic Pathway for Producing Mesostructured Plasmonic Nanostructures

Small, Oct 21, 2022

Highly branched gold (Au) nanostructures with sharp tips are considered excellent substrates for ... more Highly branched gold (Au) nanostructures with sharp tips are considered excellent substrates for surface‐enhanced Raman scattering (SERS)‐based sensing technologies. Here, a simple synthetic route for producing Au or Au‐Ag bimetallic mesostructures with multiple sharpened tips in the presence of carbon quantum dots (CQDs) is presented. The morphologies of these mesostructured plasmonic nanoparticles (MSPNs) can be controlled by adjusting the concentration of CQDs, reaction temperatures, and seed particles. The optimal molar ratio for [HAuCl4]/[CQDs] is found to be ≈25. At this molar ratio, the diameters of MSPNs can be tuned from 80 to 200 nm by changing the reaction temperature from 25 to 80 °C. In addition, it is found that hierarchical MSPNs consisting of multiple Au nanocrystals can be formed over the entire seed particle surface. Finally, the SERS activity of these MSPNs is examined through the detection of rhodamine 6G and methylene blue. Of the different mesostructures, the bimetallic MSPNs have the highest sensitivity with the ability to detect 10−7 m of rhodamine 6G and 10−6 m of methylene blue. The properties of these MSPN particles, made using a novel synthetic process, make them excellent candidates for SERS‐based chemical sensing applications.

Research paper thumbnail of CARS microscopy lights up lipids in living cells

these techniques, imaging with chemical selectivity in unstained samples. CARS microscopy is a no... more these techniques, imaging with chemical selectivity in unstained samples. CARS microscopy is a nonlinear imaging technique that produces images of chemical species based on their vibra-tional signatures. The past five years have seen advances in both the understanding of the method's contrast mechanism and the available instrumentation. 1 Conventional laser scanning microscopes can rou-B iologists desire imaging techniques that provide contrast with high sensitivity and selectivity but without altering the sample. Fluorescence mi-croscopy has high sensitivity, but dyes can alter the sample. Phase-contrast and differential-interference-contrast microscopes avoid this problem at the cost of chemical specificity. Coherent anti-Stokes Raman scattering (CARS) microscopy fits CARS Microscopy Lights Up Lipids in Living Cells tinely carry out these imaging experiments with benign excitation powers of 1 to 2 mW and image acquisition rates up to that of video. The technique is shedding light on many emerging and exciting biological applications. Among the chemical species that it has revealed in living cells, 2 lipids provide the best contrast, offering great potential to augment biomedical research in lipid-related diseases such as obesity and atherosclerosis. CARS microscopy relies on the Raman effect. In the spontaneous Raman process, molecules scatter photons, modifying the photon energy with energy quanta that corresponds to the molecules' vibrational modes. Hence, spontaneous Raman LIVE-CELL IMAGING Figure. 1. In Raman scattering processes, incoming light changes frequency according to a vibrational frequency (Ω) of the molecules. Red-and blue-shifted components are termed Stokes and anti-Stokes lines, respectively. In spontaneous Raman (A), thermally driven and random-phased molecular vibrations cause inefficient scattering in all directions. In coherent anti-Stokes Raman scattering (B), two excitation beams at frequencies ω p and ω s form a beating field with frequency ω p Ϫ ω s. When ω p Ϫ ω s matches Ω, the molecular vibrations occur in-phase and efficiently, resulting in a strong directional signal.

Research paper thumbnail of Toward the Chemistry of Carboxylic Single-Walled Carbon Nanotubes by Chemical Force Microscopy

Journal of Physical Chemistry B, Mar 30, 2002

Research paper thumbnail of Accelerating 3B single-molecule super-resolution microscopy with cloud computing

Nature Methods, Jan 30, 2013

Research paper thumbnail of Peroxisome Proliferator-Activated Receptor α Antagonism Inhibits Hepatitis C Virus Replication

Chemistry & Biology, 2006

Hepatitis C virus (HCV) is a global health problem and a leading cause of liver disease. Here, we... more Hepatitis C virus (HCV) is a global health problem and a leading cause of liver disease. Here, we demonstrate that the replication of HCV replicon RNA in Huh-7 cells is inhibited by a peroxisome proliferator-activated receptor (PPAR) antagonist, 2-chloro-5-nitro-N-(pyridyl)benzamide (BA). Downregulation of PPARgamma with RNA interference approaches had no effect on HCV replication in Huh-7 cells, whereas PPARalpha downregulation inhibited HCV replication. Fluorescence and coherent anti-Stokes Raman scattering (CARS) microscopy demonstrate a clear buildup of lipids upon treatment with BA. These observations are consistent with the misregulation of lipid metabolism, phospholipid secretion, cholesterol catabolism, and triglyceride clearance events associated with the inhibition of PPARalpha. The inhibition of HCV replication by BA may result from disrupting lipidation of host proteins associated with the HCV replication complex or, more generally, by disrupting the membranous web where HCV replicates.

Research paper thumbnail of Chemically Assembled Single-Wall Carbon Nanotubes and their Electrochemistry

ChemPhysChem, Oct 18, 2002

Research paper thumbnail of Studying Ras Nanocluster Formation on the Cell Membrane with Correlative Superresolution and Electron Microscopies

Microscopy and Microanalysis, Aug 1, 2019

Research paper thumbnail of Immobilizing Shortened Single-Walled Carbon Nanotubes (SWNTs) on Gold Using a Surface Condensation Method

Journal of Colloid and Interface Science, 2002

Research paper thumbnail of Subcellular Targeted Nanohoop for One- and Two-Photon Live Cell Imaging

ACS Nano, Sep 2, 2021

Fluorophores are powerful tools for interrogating biological systems. Carbon nanotubes (CNTs) hav... more Fluorophores are powerful tools for interrogating biological systems. Carbon nanotubes (CNTs) have long been attractive materials for biological imaging due to their near-infrared excitation and bright, tunable optical properties. The difficulty in synthesizing and functionalizing these materials with precision, however, has hampered progress in this area. Carbon nanohoops, which are macrocyclic CNT substructures, are carbon nanostructures that possess ideal photophysical characteristics of nanomaterials, while maintaining the precise synthesis of small molecules. However, much work remains to advance the nanohoop class of fluorophores as biological imaging agents. Herein, we report an intracellular targeted nanohoop. This fluorescent nanostructure is noncytotoxic at concentrations up to 50 μM, and cellular uptake investigations indicate internalization through endocytic pathways. Additionally, we employ this nanohoop for two-photon fluorescence imaging, demonstrating a high two-photon absorption cross-section (65 GM) and photostability comparable to a commercial probe. This work further motivates continued investigations into carbon nanohoop photophysics and their biological imaging applications.

Research paper thumbnail of Cancer Theranostics: Myeloid-Derived Suppressor Cell Membrane-Coated Magnetic Nanoparticles for Cancer Theranostics by Inducing Macrophage Polarization and Synergizing Immunogenic Cell Death (Adv. Funct. Mater. 37/2018)

Advanced Functional Materials, Sep 1, 2018

Research paper thumbnail of Critical Behavior of Subcellular Density Organization During Neutrophil Activation and Migration

Cellular and Molecular Bioengineering, Jun 3, 2015

Research paper thumbnail of Myeloid-Derived Suppressor Cell Membrane-Coated Magnetic Nanoparticles for Cancer Theranostics by Inducing Macrophage Polarization and Synergizing Immunogenic Cell Death

Advanced Functional Materials, Jul 24, 2018

Research paper thumbnail of Fast and Multiplexed Super Resolution Imaging of Fixed and Immunostained Cells with DNA‐PAINT‐ERS

Current protocols, Nov 1, 2022