Colleen Mchugh • UCSD Profiles (original) (raw)

  1. MALAT1 regulates mRNA processing through sequence dependent RNA-RNA and RNA-protein interactions. Nucleic Acids Res. 2025 Aug 11; 53(15). Balaji A, Hall S, Johnson R, Zhu J, Ellis L, McHugh CA. PMID: 40808300; PMCID: PMC12350098.
    View in: PubMed Mentions: 3 Fields:
    Translation:HumansCells
  2. DUBR non-coding RNA regulates gene expression by affecting AP-1 enhancer accessibility. Funct Integr Genomics. 2025 Mar 21; 25(1):68. Hall SD, Tran K, Zhu J, Su T, McHugh CA. PMID: 40117000; PMCID: PMC11928367.
    View in: PubMed Mentions: 2 Fields:
    Translation:HumansCells
  3. The levels of the long noncoding RNA MALAT1 affect cell viability and modulate TDP-43 binding to mRNA in the nucleus. J Biol Chem. 2025 03; 301(3):108207. Balaji A, Button AC, Hall SD, Zhu J, Ellis L, Lavorando E, Ashley EL, Johnson R, Sarikhani E, Jahed Z, McHugh CA. PMID: 39837396; PMCID: PMC11871449.
    View in: PubMed Mentions: 2 Fields:
    Translation:HumansCells
  4. Engineered Nanotopographies Induce Transient Openings in the Nuclear Membrane. Adv Funct Mater. 2025 Feb 05; 35(6). Sarikhani E, Patel V, Li Z, Meganathan DP, Rahmani K, Sadr L, Hosseini R, Visda D, Shukla S, Naghsh-Nilchi H, Balaji A, McMahon G, Chen S, Schöneberg J, McHugh CA, Shi L, Jahed Z. PMID: 40657484; PMCID: PMC12246998.
    View in: PubMed Mentions: 5
  5. GRAS1 non-coding RNA protects against DNA damage and cell death by binding and stabilizing NKAP. bioRxiv. 2024 Apr 11. Su T, Trang N, Zhu J, Kong L, Cheung D, Chou V, Ellis L, Huang C, Camden N, McHugh CA. PMID: 38645172; PMCID: PMC11030241.
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  6. Dissection of protein and RNA regions required for SPEN binding to XIST A-repeat RNA. RNA. 2024 02 16; 30(3):240-255. Button AC, Hall SD, Ashley EL, McHugh CA. PMID: 38164599; PMCID: PMC10870365.
    View in: PubMed Mentions: 1 Fields:
    Translation:HumansCells
  7. Streamlined Purification of RNA-Protein Complexes Using UV Cross-Linking and RNA Antisense Purification. Methods Mol Biol. 2023; 2666:213-229. Trang N, Su T, Hall S, Boutros N, Kong B, Huang C, McHugh CA. PMID: 37166668.
    View in: PubMed Mentions: 2 Fields:
    Translation:Cells
  8. Examination of the Cell Cycle Dependence of Cytosine and Adenine Base Editors. Front Genome Ed. 2022; 4:923718. Burnett CA, Wong AT, Vasquez CA, McHugh CA, Yeo GW, Komor AC. PMID: 35910415; PMCID: PMC9333457.
    View in: PubMed Mentions: 5
  9. RAP-MS: A Method to Identify Proteins that Interact Directly with a Specific RNA Molecule in Cells. Methods Mol Biol. 2018; 1649:473-488. McHugh CA, Guttman M. PMID: 29130217.
    View in: PubMed Mentions: 58 Fields:
    Translation:AnimalsCells
  10. The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. Nature. 2015 May 14; 521(7551):232-6. McHugh CA, Chen CK, Chow A, Surka CF, Tran C, McDonel P, Pandya-Jones A, Blanco M, Burghard C, Moradian A, Sweredoski MJ, Shishkin AA, Su J, Lander ES, Hess S, Plath K, Guttman M. PMID: 25915022; PMCID: PMC4516396.
    View in: PubMed Mentions: 656 Fields:
    Translation:AnimalsCells
  11. A virus capsid-like nanocompartment that stores iron and protects bacteria from oxidative stress. EMBO J. 2014 Sep 01; 33(17):1896-911. McHugh CA, Fontana J, Nemecek D, Cheng N, Aksyuk AA, Heymann JB, Winkler DC, Lam AS, Wall JS, Steven AC, Hoiczyk E. PMID: 25024436; PMCID: PMC4195785.
    View in: PubMed Mentions: 97 Fields:
    Translation:Cells
  12. Methods for comprehensive experimental identification of RNA-protein interactions. Genome Biol. 2014 Jan 27; 15(1):203. McHugh CA, Russell P, Guttman M. PMID: 24467948; PMCID: PMC4054858.
    View in: PubMed Mentions: 94 Fields:
    Translation:HumansAnimalsCells
  13. BacM, an N-terminally processed bactofilin of Myxococcus xanthus, is crucial for proper cell shape. Mol Microbiol. 2011 May; 80(4):1031-51. Koch MK, McHugh CA, Hoiczyk E. PMID: 21414039; PMCID: PMC3091990.
    View in: PubMed Mentions: 45 Fields:
    Translation:Cells
  14. Lipid body formation plays a central role in cell fate determination during developmental differentiation of Myxococcus xanthus. Mol Microbiol. 2009 Oct; 74(2):497-517. Hoiczyk E, Ring MW, McHugh CA, Schwär G, Bode E, Krug D, Altmeyer MO, Lu JZ, Bode HB. PMID: 19788540; PMCID: PMC2877170.
    View in: PubMed Mentions: 26 Fields:
    Translation:Cells
  15. The Anopheles gambiae adult midgut peritrophic matrix proteome. Insect Biochem Mol Biol. 2009 Feb; 39(2):125-34. Dinglasan RR, Devenport M, Florens L, Johnson JR, McHugh CA, Donnelly-Doman M, Carucci DJ, Yates JR, Jacobs-Lorena M. PMID: 19038338; PMCID: PMC2684889.
    View in: PubMed Mentions: 54 Fields:
    Translation:HumansAnimalsCellsPHPublic Health
  16. Fragment-based identification of determinants of conformational and spectroscopic change at the ricin active site. BMC Struct Biol. 2007 Nov 06; 7:72. Carra JH, McHugh CA, Mulligan S, Machiesky LM, Soares AS, Millard CB. PMID: 17986339; PMCID: PMC2194779.
    View in: PubMed Mentions: 11 Fields:
    Translation:Cells
  17. Improved stability of a protein vaccine through elimination of a partially unfolded state. Protein Sci. 2004 Oct; 13(10):2736-43. McHugh CA, Tammariello RF, Millard CB, Carra JH. PMID: 15340172; PMCID: PMC2286567.
    View in: PubMed Mentions: 25 Fields:
    Translation:HumansAnimalsCells

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

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