Elie Farah • UCSD Profiles (original) (raw)
- MERFISH+, a large-scale, multi-omics spatial technology resolves the molecular holograms of the 3D human developing heart. bioRxiv. 2025 Nov 04. Kern C, Zhang Q, Lu Y, Eschbach J, Zeng Z, Farah EN, Tai CY, Yang K, Jenie I, Yao F, Zhao Z, Ma Q, Padilla CG, Monell A, Moghadami S, Zhu F, Li B, Hou A, Tucker G, Ellison D, Chi NC, Qiu X, Zhu Q, Bintu B. PMID: 41279640; PMCID: PMC12637541.
View in: PubMed Mentions: - Charting the cardiac landscape: Advances in spatial transcriptomics for heart biology. Semin Cell Dev Biol. 2025 Nov-Dec; 175:103648. Farah EN, Diaz JT, Bloomekatz J, Chi NC. PMID: 40882280.
View in: PubMed Mentions: 2 Fields:
Translation:HumansAnimalsCells - Single cell multiomics reveals drivers of metabolic dysfunction-associated steatohepatitis. medRxiv. 2025 May 11. Elison W, Chang L, Xie Y, Miciano C, Yang Q, Mummey H, Lancione R, Corban S, Sakane S, Lucero J, Mamde S, Kim HY, Kim MJ, Melton R, Tucciarone L, Lie A, Loe T, Vashist T, Dang K, Elgamal R, Li D, Vu M, Farah EN, Seng C, Djulamsah J, Yang B, Buchanan J, Miller M, Tran M, Birrueta JO, Chi NC, Wang T, D'Antonio-Chronowska A, Wang A, Kisseleva T, Brenner D, Ren B, Gaulton KJ. PMID: 40385416; PMCID: PMC12083587.
View in: PubMed Mentions: - Single cell multiomics and 3D genome architecture reveal novel pathways of human heart failure. medRxiv. 2025 May 09. Xie Y, Tucciarone L, Farah EN, Chang L, Yang Q, Shankar TS, Elison W, Tran S, Djulamsah J, Lie A, Loe T, Holman AR, Corban S, Buchanan J, Mamde S, Zhou H, Elgamal RM, Tseliou E, Huang V, Wang Z, Chiu J, Melton R, Griffin E, Zhang Q, Lucero J, Navankasattusas S, Li D, Seng C, Destici E, Selzman CH, D'Antonio-Chronowska A, Wang T, Wang A, Drakos SG, Gaulton KJ, Ren B, Chi NC. PMID: 40385400; PMCID: PMC12083629.
View in: PubMed Mentions: - CXCL12 drives natural variation in coronary artery anatomy across diverse populations. Cell. 2025 Apr 03; 188(7):1784-1806.e22. Rios Coronado PE, Zhou J, Fan X, Zanetti D, Naftaly JA, Prabala P, Martínez Jaimes AM, Farah EN, Kundu S, Deshpande SS, Evergreen I, Kho PF, Ma Q, Hilliard AT, Abramowitz S, Pyarajan S, Dochtermann D, Million Veteran Program, Damrauer SM, Chang KM, Levin MG, Winn VD, Pasca AM, Plomondon ME, Waldo SW, Tsao PS, Kundaje A, Chi NC, Clarke SL, Red-Horse K, Assimes TL. PMID: 40049164; PMCID: PMC12029448.
View in: PubMed Mentions: 3 Fields:
Translation:HumansAnimals - Single-cell multi-modal integrative analyses highlight functional dynamic gene regulatory networks directing human cardiac development. Cell Genom. 2024 Nov 13; 4(11):100680. Holman AR, Tran S, Destici E, Farah EN, Li T, Nelson AC, Engler AJ, Chi NC. PMID: 39437788; PMCID: PMC11605693.
View in: PubMed Mentions: 4 Fields:
Translation:HumansCells - CXCL12 drives natural variation in coronary artery anatomy across diverse populations. medRxiv. 2024 Jul 05. Rios Coronado PE, Zanetti D, Zhou J, Naftaly JA, Prabala P, Martínez Jaimes AM, Farah EN, Fan X, Kundu S, Deshpande SS, Evergreen I, Kho PF, Hilliard AT, Abramowitz S, Pyarajan S, Dochtermann D, Million Veteran Program, Damrauer SM, Chang KM, Levin MG, Winn VD, Pasca AM, Plomondon ME, Waldo SW, Tsao PS, Kundaje A, Chi NC, Clarke SL, Red-Horse K, Assimes TL. PMID: 37961706; PMCID: PMC10635223.
View in: PubMed Mentions: - Spatially organized cellular communities form the developing human heart. Nature. 2024 Mar; 627(8005):854-864. Farah EN, Hu RK, Kern C, Zhang Q, Lu TY, Ma Q, Tran S, Zhang B, Carlin D, Monell A, Blair AP, Wang Z, Eschbach J, Li B, Destici E, Ren B, Evans SM, Chen S, Zhu Q, Chi NC. PMID: 38480880; PMCID: PMC10972757.
View in: PubMed Mentions: 66 Fields:
Translation:HumansAnimalsCells - Author Correction: Human-gained heart enhancers are associated with species-specific cardiac attributes. Nat Cardiovasc Res. 2022 Dec; 1(12):1231. Destici E, Zhu F, Tran S, Preissl S, Farah EN, Zhang Y, Hou X, Poirion OB, Lee AY, Grinstein JD, Bloomekatz J, Kim HS, Hu R, Evans SM, Ren B, Benner C, Chi NC. PMID: 39196171.
View in: PubMed Mentions: 1 Fields: - Human-gained heart enhancers are associated with species-specific cardiac attributes. Nat Cardiovasc Res. 2022 Sep; 1(9):830-843. Destici E, Zhu F, Tran S, Preissl S, Farah EN, Zhang Y, Hou X, Poirion OB, Lee AY, Grinstein JD, Bloomekatz J, Kim HS, Hu R, Evans SM, Ren B, Benner C, Chi NC. PMID: 36817700; PMCID: PMC9937543.
View in: PubMed Mentions: 5 Fields: - Cell Layers: uncovering clustering structure in unsupervised single-cell transcriptomic analysis. Bioinform Adv. 2022; 2(1):vbac051. Blair AP, Hu RK, Farah EN, Chi NC, Pollard KS, Przytycki PF, Kathiriya IS, Bruneau BG. PMID: 35967929; PMCID: PMC9362878.
View in: PubMed Mentions: 1 - Cardiac cell type-specific gene regulatory programs and disease risk association. Sci Adv. 2021 05; 7(20). Hocker JD, Poirion OB, Zhu F, Buchanan J, Zhang K, Chiou J, Wang TM, Zhang Q, Hou X, Li YE, Zhang Y, Farah EN, Wang A, McCulloch AD, Gaulton KJ, Ren B, Chi NC, Preissl S. PMID: 33990324; PMCID: PMC8121433.
View in: PubMed Mentions: 72 Fields:
Translation:HumansCells - Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells. Nat Genet. 2019 09; 51(9):1380-1388. Zhang Y, Li T, Preissl S, Amaral ML, Grinstein JD, Farah EN, Destici E, Qiu Y, Hu R, Lee AY, Chee S, Ma K, Ye Z, Zhu Q, Huang H, Fang R, Yu L, Izpisua Belmonte JC, Wu J, Evans SM, Chi NC, Ren B. PMID: 31427791; PMCID: PMC6722002.
View in: PubMed Mentions: 191 Fields:
Translation:HumansAnimalsCells - Canonical Wnt5b Signaling Directs Outlying Nkx2.5+ Mesoderm into Pacemaker Cardiomyocytes. Dev Cell. 2019 09 23; 50(6):729-743.e5. Ren J, Han P, Ma X, Farah EN, Bloomekatz J, Zeng XI, Zhang R, Swim MM, Witty AD, Knight HG, Deshpande R, Xu W, Yelon D, Chen S, Chi NC. PMID: 31402282; PMCID: PMC6759400.
View in: PubMed Mentions: 55 Fields:
Translation:HumansAnimalsCells - Combinatorial interactions of genetic variants in human cardiomyopathy. Nat Biomed Eng. 2019 02; 3(2):147-157. Deacon DC, Happe CL, Chen C, Tedeschi N, Manso AM, Li T, Dalton ND, Peng Q, Farah EN, Gu Y, Tenerelli KP, Tran VD, Chen J, Peterson KL, Schork NJ, Adler ED, Engler AJ, Ross RS, Chi NC. PMID: 30923642; PMCID: PMC6433174.
View in: PubMed Mentions: 28 Fields:
Translation:HumansAnimalsCells - mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances. Nat Commun. 2018 10 18; 9(1):4328. Lai WC, Kayedkhordeh M, Cornell EV, Farah E, Bellaousov S, Rietmeijer R, Salsi E, Mathews DH, Ermolenko DN. PMID: 30337527; PMCID: PMC6193969.
View in: PubMed Mentions: 56 Fields:
Translation:HumansCells - Cell-Surface Marker Signature for Enrichment of Ventricular Cardiomyocytes Derived from Human Embryonic Stem Cells. Stem Cell Reports. 2018 09 11; 11(3):828-841. Veevers J, Farah EN, Corselli M, Witty AD, Palomares K, Vidal JG, Emre N, Carson CT, Ouyang K, Liu C, van Vliet P, Zhu M, Hegarty JM, Deacon DC, Grinstein JD, Dirschinger RJ, Frazer KA, Adler ED, Knowlton KU, Chi NC, Martin JC, Chen J, Evans SM. PMID: 30122443; PMCID: PMC6135222.
View in: PubMed Mentions: 27 Fields:
Translation:HumansCells - EF-G Activation by Phosphate Analogs. J Mol Biol. 2016 05 22; 428(10 Pt B):2248-58. Salsi E, Farah E, Ermolenko DN. PMID: 27063503; PMCID: PMC4884529.
View in: PubMed Mentions: 18 Fields:
Translation:Cells - Movement of elongation factor G between compact and extended conformations. J Mol Biol. 2015 Jan 30; 427(2):454-67. Salsi E, Farah E, Netter Z, Dann J, Ermolenko DN. PMID: 25463439; PMCID: PMC4297505.
View in: PubMed Mentions: 19 Fields:
Translation:Cells - Following movement of domain IV of elongation factor G during ribosomal translocation. Proc Natl Acad Sci U S A. 2014 Oct 21; 111(42):15060-5. Salsi E, Farah E, Dann J, Ermolenko DN. PMID: 25288752; PMCID: PMC4210333.
View in: PubMed Mentions: 26 Fields:
Translation:Cells - Human biliverdin reductase-based peptides activate and inhibit glucose uptake through direct interaction with the kinase domain of insulin receptor. FASEB J. 2014 Jun; 28(6):2478-91. Gibbs PE, Lerner-Marmarosh N, Poulin A, Farah E, Maines MD. PMID: 24568842; PMCID: PMC4021440.
View in: PubMed Mentions: 26 Fields:
Translation:HumansCells
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This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
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