GenBank - PubMed (original) (raw)

GenBank

Dennis A Benson et al. Nucleic Acids Res. 2002.

Abstract

The GenBank sequence database incorporates publicly available DNA sequences of more than 105 000 different organisms, primarily through direct submission of sequence data from individual laboratories and large-scale sequencing projects. Most submissions are made using the BankIt (web) or Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Data exchange with the EMBL Data Library and the DNA Data Bank of Japan helps ensure comprehensive worldwide coverage. GenBank data is accessible through NCBI's integrated retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical literature via PubMed. Sequence similarity searching is provided by the BLAST family of programs. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. NCBI also offers a wide range of World Wide Web retrieval and analysis services based on GenBank data. The GenBank database and related resources are freely accessible via the NCBI home page at http://www.ncbi.nlm.nih.gov.

PubMed Disclaimer

Similar articles

• GenBank.
  Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL. Benson DA, et al. Nucleic Acids Res. 2000 Jan 1;28(1):15-8. doi: 10.1093/nar/28.1.15. Nucleic Acids Res. 2000. PMID: 10592170 Free PMC article.
• GenBank.
  Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. Benson DA, et al. Nucleic Acids Res. 2003 Jan 1;31(1):23-7. doi: 10.1093/nar/gkg057. Nucleic Acids Res. 2003. PMID: 12519940 Free PMC article.
• GenBank: update.
  Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. Benson DA, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6. doi: 10.1093/nar/gkh045. Nucleic Acids Res. 2004. PMID: 14681350 Free PMC article.
• Database resources of the National Center for Biotechnology Information.
  Sayers EW, Beck J, Bolton EE, Bourexis D, Brister JR, Canese K, Comeau DC, Funk K, Kim S, Klimke W, Marchler-Bauer A, Landrum M, Lathrop S, Lu Z, Madden TL, O'Leary N, Phan L, Rangwala SH, Schneider VA, Skripchenko Y, Wang J, Ye J, Trawick BW, Pruitt KD, Sherry ST. Sayers EW, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D10-D17. doi: 10.1093/nar/gkaa892. Nucleic Acids Res. 2021. PMID: 33095870 Free PMC article. Review.
• The EMBL Nucleotide Sequence Database. Contributing and accessing data.
  Hingamp P, van den Broek AE, Stoesser G, Baker W. Hingamp P, et al. Mol Biotechnol. 1999 Oct;12(3):255-67. doi: 10.1385/MB:12:3:255. Mol Biotechnol. 1999. PMID: 10631682 Review.

Cited by

• Phylogenetic properties of RNA viruses.
  Pompei S, Loreto V, Tria F. Pompei S, et al. PLoS One. 2012;7(9):e44849. doi: 10.1371/journal.pone.0044849. Epub 2012 Sep 20. PLoS One. 2012. PMID: 23028645 Free PMC article.
• Deletion of the Aspergillus fumigatus gene encoding the Ras-related protein RhbA reduces virulence in a model of Invasive pulmonary aspergillosis.
  Panepinto JC, Oliver BG, Fortwendel JR, Smith DL, Askew DS, Rhodes JC. Panepinto JC, et al. Infect Immun. 2003 May;71(5):2819-26. doi: 10.1128/IAI.71.5.2819-2826.2003. Infect Immun. 2003. PMID: 12704156 Free PMC article.
• Stratification of activity and bacterial community structure in biofilms grown on membranes transferring oxygen.
  Cole AC, Semmens MJ, LaPara TM. Cole AC, et al. Appl Environ Microbiol. 2004 Apr;70(4):1982-9. doi: 10.1128/AEM.70.4.1982-1989.2004. Appl Environ Microbiol. 2004. PMID: 15066788 Free PMC article.
• Identification and confirmation of a module of coexpressed genes.
  Thompson HG, Harris JW, Wold BJ, Quake SR, Brody JP. Thompson HG, et al. Genome Res. 2002 Oct;12(10):1517-22. doi: 10.1101/gr.418402. Genome Res. 2002. PMID: 12368243 Free PMC article.
• Rapid propagation of norovirus gastrointestinal illness through multiple nursing homes following a pilgrimage.
  Fretz R, Schmid H, Kayser U, Svoboda P, Tanner M, Baumgartner A. Fretz R, et al. Eur J Clin Microbiol Infect Dis. 2003 Oct;22(10):625-7. doi: 10.1007/s10096-003-1006-3. Epub 2003 Sep 27. Eur J Clin Microbiol Infect Dis. 2003. PMID: 14517725

References

1. 1. Benson D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J., Ouellette,B.F.F., Rapp,B.A. and Wheeler,D.L. (2000) GenBank. Nucleic Acids Res., 28, 15–18. - PMC - PubMed
2. 1. Stoesser G., Baker,W., van den Broek,A., Camon,E., Garcia-Pastor,M., Kanz,C., Kulikova,T., Lombard,V., Lopez,R., Parkinson,H., Redaschi,N., Sterk,P., Stoehr,P. and Tuli,M.A. (2001) The EMBL nucleotide sequence database. Nucleic Acids Res., 29, 17–21. Updated article in this issue: Nucleic Acids Res. (2002), 30, 21–26. - PMC - PubMed
3. 1. Tateno Y., Miyazaki,S., Ota,M., Sugawara,H. and Gojobori,T. (2000) DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams. Nucleic Acids Res., 28, 24–26. Updated article in this issue: Nucleic Acids Res. (2002), 30, 27–30. - PMC - PubMed
4. 1. Wheeler D.L., Church,D.M., Lash,A.E., Leipe,D.D., Madden,T.L., Pontius,J.U., Schuler,G.D., Schriml,L.M.,Tatusova,T.A., Wagner,L. and Rapp,B.A. (2002) Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res., 30, 13–16. - PMC - PubMed
5. 1. Boguski M.S., Lowe,T.M. and Tolstoshev,C.M. (1993) dbEST—database for ‘expressed sequence tags’. Nature Genet., 4, 332–333. - PubMed

MeSH terms

LinkOut - more resources

• Full Text Sources

  • Archivio Istituzionale della Ricerca Unimi
  • Europe PubMed Central
  • Ovid Technologies, Inc.
  • PubMed Central
  • Silverchair Information Systems

• Other Literature Sources

  • The Lens - Patent Citations Database

• Research Materials

  • NCI CPTC Antibody Characterization Program