The NUG1 GTPase reveals and N-terminal RNA-binding domain that is essential for association with 60 S pre-ribosomal particles - PubMed (original) (raw)
. 2006 Aug 25;281(34):24737-44.
doi: 10.1074/jbc.M604261200. Epub 2006 Jun 27.
Affiliations
- PMID: 16803892
- DOI: 10.1074/jbc.M604261200
Free article
The NUG1 GTPase reveals and N-terminal RNA-binding domain that is essential for association with 60 S pre-ribosomal particles
Jochen Bassler et al. J Biol Chem. 2006.
Free article
Abstract
The putative yeast GTPase Nug1, which is associated with several pre-60 S particles in the nucleolus and nucleoplasm, consists of an N-terminal domain, which is found only in eukaryotic orthologues, and middle and C-terminal domains that are conserved throughout eukaryotes, bacteria, and archaea. Here, we analyzed the role of the eukaryote-specific Nug1 N-domain (Nug1-N). We show that the essential Nug1-N is sufficient and necessary for nucle(ol)ar targeting and association with pre-60 S particles. Nug1-N exhibits RNA binding activity and is genetically linked in an allele-specific way to the pre-60 S factors Noc2, Noc3, and Dbp10. In contrast, the middle domain, which exhibits a circularly permuted GTPase fold and an intrinsic GTP hydrolysis activity in vitro, is not essential for cell growth. The conserved Nug1 C-domain, which has a yet uncharacterized fold, is also essential for ribosome biogenesis. Our findings suggest that Nug1 associates with pre-60 S subunits via its essential N-terminal RNA-binding domain and exerts a non-essential regulative role in pre-60 S subunit biogenesis via its central GTPase domain.
Similar articles
- The RNA helicase Dbp10 coordinates assembly factor association with PTC maturation during ribosome biogenesis.
Mitterer V, Hamze H, Kunowska N, Stelzl U, Henras AK, Hurt E. Mitterer V, et al. Nucleic Acids Res. 2024 Feb 28;52(4):1975-1987. doi: 10.1093/nar/gkad1206. Nucleic Acids Res. 2024. PMID: 38113283 Free PMC article. - The K⁺-dependent GTPase Nug1 is implicated in the association of the helicase Dbp10 to the immature peptidyl transferase centre during ribosome maturation.
Manikas RG, Thomson E, Thoms M, Hurt E. Manikas RG, et al. Nucleic Acids Res. 2016 Feb 29;44(4):1800-12. doi: 10.1093/nar/gkw045. Epub 2016 Jan 28. Nucleic Acids Res. 2016. PMID: 26823502 Free PMC article. - Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export.
Matsuo Y, Granneman S, Thoms M, Manikas RG, Tollervey D, Hurt E. Matsuo Y, et al. Nature. 2014 Jan 2;505(7481):112-116. doi: 10.1038/nature12731. Epub 2013 Nov 17. Nature. 2014. PMID: 24240281 Free PMC article. - Yeast and human RNA helicases involved in ribosome biogenesis: current status and perspectives.
Rodríguez-Galán O, García-Gómez JJ, de la Cruz J. Rodríguez-Galán O, et al. Biochim Biophys Acta. 2013 Aug;1829(8):775-90. doi: 10.1016/j.bbagrm.2013.01.007. Epub 2013 Jan 26. Biochim Biophys Acta. 2013. PMID: 23357782 Review. - Nuclear export of messenger RNA.
Izaurralde E. Izaurralde E. Results Probl Cell Differ. 2002;35:133-50. doi: 10.1007/978-3-540-44603-3_7. Results Probl Cell Differ. 2002. PMID: 11791404 Review. No abstract available.
Cited by
- Placeholder factors in ribosome biogenesis: please, pave my way.
Espinar-Marchena FJ, Babiano R, Cruz J. Espinar-Marchena FJ, et al. Microb Cell. 2017 Apr 27;4(5):144-168. doi: 10.15698/mic2017.05.572. Microb Cell. 2017. PMID: 28685141 Free PMC article. Review. - Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing.
Gamalinda M, Jakovljevic J, Babiano R, Talkish J, de la Cruz J, Woolford JL Jr. Gamalinda M, et al. Nucleic Acids Res. 2013 Feb 1;41(3):1965-83. doi: 10.1093/nar/gks1272. Epub 2012 Dec 24. Nucleic Acids Res. 2013. PMID: 23268442 Free PMC article. - RNA folding and functions of RNA helicases in ribosome biogenesis.
Mitterer V, Pertschy B. Mitterer V, et al. RNA Biol. 2022 Jan;19(1):781-810. doi: 10.1080/15476286.2022.2079890. RNA Biol. 2022. PMID: 35678541 Free PMC article. Review. - Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and dicotyledonous plants.
Im CH, Hwang SM, Son YS, Heo JB, Bang WY, Suwastika IN, Shiina T, Bahk JD. Im CH, et al. J Biol Chem. 2011 Mar 11;286(10):8620-8632. doi: 10.1074/jbc.M110.200816. Epub 2011 Jan 4. J Biol Chem. 2011. PMID: 21205822 Free PMC article. - The RNA helicase Dbp10 coordinates assembly factor association with PTC maturation during ribosome biogenesis.
Mitterer V, Hamze H, Kunowska N, Stelzl U, Henras AK, Hurt E. Mitterer V, et al. Nucleic Acids Res. 2024 Feb 28;52(4):1975-1987. doi: 10.1093/nar/gkad1206. Nucleic Acids Res. 2024. PMID: 38113283 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Molecular Biology Databases
Research Materials