The taxonomy of binding sites in proteins - PubMed (original) (raw)

Review

. 1978 Nov 16;21(3):161-82.

doi: 10.1007/BF00240135.

• PMID: 366387
• DOI: 10.1007/BF00240135

Review

The taxonomy of binding sites in proteins

M G Rossmann et al. Mol Cell Biochem. 1978.

Abstract

Conservation of polypeptide fold and mode of ligand binding is frequently found within proteins of related function. Examples illustrating this phenomenon are taken from NAD linked enzymes, nucleotide binding proteins, polysaccharide binding proteins, heme binding proteins and enzymes with essential Fe--S complexes or zinc atoms.

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References

1. 1. Science. 1967 Jan 20;155(3760):279-84 - PubMed
2. 1. J Mol Biol. 1978 Dec 5;126(2):141-58 - PubMed
3. 1. Proc Natl Acad Sci U S A. 1975 Jan;72(1):51-5 - PubMed
4. 1. CRC Crit Rev Biochem. 1975 Aug;3(2):111-40 - PubMed
5. 1. Cold Spring Harb Symp Quant Biol. 1972;36:117-23 - PubMed

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