Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases - PubMed (original) (raw)

Review

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

S F Altschul et al. Trends Biochem Sci. 1998 Nov.

No abstract available

PubMed Disclaimer

Similar articles

• Recent Hits Acquired by BLAST (ReHAB): a tool to identify new hits in sequence similarity searches.
  Whitney J, Esteban DJ, Upton C. Whitney J, et al. BMC Bioinformatics. 2005 Feb 8;6:23. doi: 10.1186/1471-2105-6-23. BMC Bioinformatics. 2005. PMID: 15701178 Free PMC article.
• IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
  Schäffer AA, Wolf YI, Ponting CP, Koonin EV, Aravind L, Altschul SF. Schäffer AA, et al. Bioinformatics. 1999 Dec;15(12):1000-11. doi: 10.1093/bioinformatics/15.12.1000. Bioinformatics. 1999. PMID: 10745990
• Construction and analysis of a profile library characterizing groups of structurally known proteins.
  Ogiwara A, Uchiyama I, Takagi T, Kanehisa M. Ogiwara A, et al. Protein Sci. 1996 Oct;5(10):1991-9. doi: 10.1002/pro.5560051005. Protein Sci. 1996. PMID: 8897599 Free PMC article.
• From genome to function.
  Thornton JM. Thornton JM. Science. 2001 Jun 15;292(5524):2095-7. doi: 10.1126/science.292.5524.2095. Science. 2001. PMID: 11408660 Review. No abstract available.
• Searching protein structure databases has come of age.
  Holm L, Sander C. Holm L, et al. Proteins. 1994 Jul;19(3):165-73. doi: 10.1002/prot.340190302. Proteins. 1994. PMID: 7937731 Review.

Cited by

• Fast, sensitive detection of protein homologs using deep dense retrieval.
  Hong L, Hu Z, Sun S, Tang X, Wang J, Tan Q, Zheng L, Wang S, Xu S, King I, Gerstein M, Li Y. Hong L, et al. Nat Biotechnol. 2024 Aug 9. doi: 10.1038/s41587-024-02353-6. Online ahead of print. Nat Biotechnol. 2024. PMID: 39123049
• An anti-CRISPR that pulls apart a CRISPR-Cas complex.
  Trost CN, Yang J, Garcia B, Hidalgo-Reyes Y, Fung BCM, Wang J, Lu WT, Maxwell KL, Wang Y, Davidson AR. Trost CN, et al. Nature. 2024 Aug;632(8024):375-382. doi: 10.1038/s41586-024-07642-3. Epub 2024 Jul 3. Nature. 2024. PMID: 38961300
• Genetic Loci of Plant Pathogenic Dickeya solani IPO 2222 Expressed in Contact with Weed-Host Bittersweet Nightshade (Solanum dulcamara L.) Plants.
  Czajkowski R, Krzyżanowska DM, Sokolova D, Rąbalski Ł, Kosiński M, Jafra S, Królicka A. Czajkowski R, et al. Int J Mol Sci. 2024 Feb 28;25(5):2794. doi: 10.3390/ijms25052794. Int J Mol Sci. 2024. PMID: 38474041 Free PMC article.
• Integrative structural analysis of Pseudomonas phage DEV reveals a genome ejection motor.
  Cingolani G, Lokareddy R, Hou CF, Forti F, Iglesias S, Li F, Pavlenok M, Niederweis M, Briani F. Cingolani G, et al. Res Sq [Preprint]. 2024 Feb 21:rs.3.rs-3941185. doi: 10.21203/rs.3.rs-3941185/v1. Res Sq. 2024. PMID: 38463957 Free PMC article. Preprint.
• GBDT_KgluSite: An improved computational prediction model for lysine glutarylation sites based on feature fusion and GBDT classifier.
  Liu X, Zhu B, Dai XW, Xu ZA, Li R, Qian Y, Lu YP, Zhang W, Liu Y, Zheng J. Liu X, et al. BMC Genomics. 2023 Dec 11;24(1):765. doi: 10.1186/s12864-023-09834-z. BMC Genomics. 2023. PMID: 38082413 Free PMC article.

Publication types

MeSH terms

Substances

LinkOut - more resources

• Full Text Sources

  • Elsevier Science

• Other Literature Sources

  • The Lens - Patent Citations

• Research Materials

  • NCI CPTC Antibody Characterization Program