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The paper summarises many years of discussions and experience of biodiversity publishers, organisations, research projects and individual researchers, and proposes recommendations for implementation of persistent identifiers for article metadata, structural elements (sections, subsections, figures, tables, references, supplementary materials and others) and data specific to biodiversity (taxonomic treatments, treatment citations, taxon names, material citations, gene sequences, specimens, scientific collections) in taxonomy and biodiversity publishing. The paper proposes best practices on how identifiers should be used in the different cases and on how they can be minted, cited, and expressed in the backend article XML to facilitate conversion to and further re-use of the article content as FAIR data. The paper also discusses several specific routes for post-publication re-use of semantically enhanced content through large biodiversity data aggregators such as the Global Biodiversit...
Indispensable Necessity - Researchers? Digital Identity: Special Reference to ORCID ID
International Journal of Library and Information Studies, 2018
In last two decades research and number of researcher also increased day by day as the technology remove the boundary barrier of information access. The researcher must be cite the research article which used by them in the research work. But ambiguity in name is one of the big challenges while citation and citation analysis too. As the various naming style exist worldwide and with the different naming style it becomes more difficult to count the citation credit. Unique identification to a researcher give the solution of this name ambiguity and give proper citation record and mange the whole research contribution of researcher on a single platform. Non-profit community driven ORCID, Inc provides the ORCID-Open Researcher and Contributor ID the unique research identification to a researcher, and linking the researcher research contribution with other IDs. It kept not only the contribution record of researcher but also useful to researcher for job profiling, for project funding and as well useful to the publishers, organization, funding agencies, government to keep track on researcher contribution toward subject. The paper describes the features of identifiers and point out the requirements of identifiers adoption in special context of ORCID. Worldwide numbers of researcher register in ORCID by individual or via consortia base. In India individual researcher register in small number in compare of numbers of Indian researchers, but not any consortia till register in ORCID from India. The Government and private Funding agency, Education Commissions, Education committees, Organization, nation information center like INFLIBNET have to be develop a proper system for uplift the researcher's registration in Open source unique identifier ORCID.
Open Researcher and Contributor Identifier and other author identifiers: Perspective from Pakistan
JPMA. The Journal of the Pakistan Medical Association, 2019
The Open Researcher and Contributor ID (ORCID) is a globally trending initiative for author name disambiguation and serves as a 'digital curriculum vitae' for displaying an individual's research output. Although there are several other tools similar to ORCID, the collaborative efforts by ORCID make it the most attractive option. Most of the organizations and publishers are increasingly adopting ORCID in their systems, and authors from West and other parts of the world have attempted to create awareness about ORCID initiative. However, researchers from Pakistan and other developing countries should be introduced to this concept and be encouraged to adopt to such initiatives. Therefore, this paper aims to present a brief introduction to author identifiers, with special focus on the ORCID.
Automating and Simplifying Multiparty Workflows
2018
Any broadcast organization that remains static runs the risk of being overtaken by newer, more agile alternatives. To remain competitive, broadcasters must constantly work to increase process velocity, accuracy, and flexibility. These goals cannot be reached without reducing time to market, manual touch-points, and associated labor costs. A major hurdle on this road to efficiency is the absence of a universal method to identify content, resulting in unnecessary manual workflows and timeand resource-consuming communications with third parties for the production, processing, and exchange of content. Root causes for these impracticalities include problems with work identification during acquisition, reconciliation, and de-duplication of assets obtained from multiple sources; placing high demands on limited resources; and causing delays or reducing content capacity. A necessary element to solve this problem is the use of globally unique and persistent works identification. As such, it w...
The Role of Persistent Identifiers in E-Science
2019
The transformations in science produced by the development of ICTs are conceptualized in the model of e-Science. Information on the researchers' activities in digital form is collected in several systems outside the affiliated institutions. Manuscript submission systems, grant funding applications, data centers, citation indexes, other institutional or disciplinary repositories and personal web pages are all important sources of information. Persistent identifiers allow to discover and collect this information and provide the ability to compare, analyze and combine data with greater efficiency and accuracy. The article provides an overview of the most popular persistent identifiers used in e-Science and describes their role.
Deliverable 4.4 Organizational IDs in Practice
2020
This deliverable demonstrates how the various partners in FREYA are taking up persistent identifiers for organizations as part of the Work Package 4 work on integrating emerging PID types into disciplinary contexts. A range of organization IDs are discussed with special focus on the ROR ID as a community-led initiative with open infrastructure and data that is well suited for use in an open science environment.
Userscripts for the Life Sciences
BMC Bioinformatics, 2007
The web has seen an explosion of chemistry and biology related resources in the last 15 years: thousands of scientific journals, databases, wikis, blogs and resources are available with a wide variety of types of information. There is a huge need to aggregate and organise this information. However, the sheer number of resources makes it unrealistic to link them all in a centralised manner. Instead, search engines to find information in those resources flourish, and formal languages like Resource Description Framework and Web Ontology Language are increasingly used to allow linking of resources. A recent development is the use of userscripts to change the appearance of web pages, by on-the-fly modification of the web content. This opens possibilities to aggregate information and computational results from different web resources into the web page of one of those resources.
GeneSigDB—a curated database of gene expression signatures
2010
The primary objective of most gene expression studies is the identification of one or more gene signatures; lists of genes whose transcriptional levels are uniquely associated with a specific biological phenotype. Whilst thousands of experimentally derived gene signatures are published, their potential value to the community is limited by their computational inaccessibility. Gene signatures are embedded in published article figures, tables or in supplementary materials, and are frequently presented using non-standard gene or probeset nomenclature. We present GeneSigDB (http:// compbio.dfci.harvard.edu/genesigdb) a manually curated database of gene expression signatures. GeneSigDB release 1.0 focuses on cancer and stem cells gene signatures and was constructed from more than 850 publications from which we manually transcribed 575 gene signatures. Most gene signatures (n = 560) were successfully mapped to the genome to extract standardized lists of EnsEMBL gene identifiers. GeneSigDB provides the original gene signature, the standardized gene list and a fully traceable gene mapping history for each gene from the original transcribed data table through to the standardized list of genes. The GeneSigDB web portal is easy to search, allows users to compare their own gene list to those in the database, and download gene signatures in most common gene identifier formats.
IDHOCNET: A Novel ID Centric Architecture for Ad Hoc Networks
Journal of Computer Networks and Communications, 2016
Ad hoc networks lack support of infrastructure and operate in a shared bandwidth wireless environment. Presently, such networks have been realized by various adaptations in Internet Protocol (IP) architecture which was developed for infrastructure oriented hierarchical networks. The IP architecture has its known problem and issues even in infrastructure settings, like IP address overloading, mobility, multihoming, and so forth. Therefore, when such architecture is implemented in ad hoc scenario the problems get multiplied. Due to this fact, ad hoc networks suffer from additional problems like IP address autoconfiguration, service provisioning, efficient bandwidth utilization, and node identification. In this paper we present IDHOCNET which is a novel implementation of service provisioning and application development framework in the ad hoc context. We illustrate a number of implemented features of the architecture which include IP address autoconfiguration, identification of nodes b...