Phylogenetic affinities of the Iraqi populations of Saw-scaled vipers of the genus Echis (Serpentes: Viperidae), revealed by sequences of mtDNA genes (original) (raw)
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2020
The Arabian Horned Viper, <i>Cerastes gasperettii</i>, is distributed along the eastern edge of the Sinai Peninsula south and east across the Arabian Peninsula to Iraq, Kuwait and western Iran comprising two subspecies: <i>Cerastes. g. mendelssohni</i> in the Arava valley (Israel and Jordan) and <i>C. g. gasperettii</i> in the Arabian Peninsula and southwestern Iran. Phylogenetic relationships based on Maximum Likelihood, Bayesian Inference, haplotype networks, and genetic divergence among different populations of <i>C. gasperettii</i> are analysed in this study. Two mitochondrial (<i>12S</i> and <i>Cytb</i>) and two nuclear partial genes (<i>C-mos</i> and <i>MC1R</i>) with uneven distribution among the individuals were used to infer phylogenetic relationships. Bayesian inference (BI) phylogenetic tree indicates a dichotomy separating a southern (Oman, UAE, Yemen) from a northern clade (I...
Molecular Phylogenetics of Saw-scaled Viper (Echis carinatus) from Pakistan
Pakistan Journal of Zoology, 2020
Authors' Contribution MRA, AN and ENS conceived and designed the project. MRA and PT conducted wet lab experiments. MRA, US, AN analyzed the result through bioinformatics software and tools. MJ helped to draft the manuscript. TY, ASH, MJ helped in discussion of results.
Amphibia-Reptilia, 2009
Phylogenetic analysis of 1117 bp of mitochondrial DNA sequences (731 bp of cytochrome b and 386 bp of 16S rRNA) indicate that Echis consists of four main clades: E. ocellatus, and the E. coloratus, E. pyramidum, and E. carinatus groups. In the E. coloratus group, E. coloratus itself shows substantial genetic divergence from E. omanensis, corroborating their separate species status. In the E. pyramidum clade, E. pyramidum from Egypt and E. leucogaster from West Africa are genetically very similar, even though samples are separated by 4000 km. South Arabian populations of the E. pyramidum group are much better differentiated from these and two species may be present, animals from Dhofar, southern Oman probably being referable to E. khosatzkii. In the E. carinatus group, specimens of E. carinatus sochureki and E. multisquamatus are very similar in their DNA. The phylogeny indicates that the split between the main groups of Echis was followed by separation of African and Arabian members...
Recent advances in phylogeny and taxonomy of Near and Middle Eastern vipers–an update
2009
Th e number of recognized viper species in the Near and Middle East has been raised signifi cantly in the last 25 years (Table 1). While some smaller genera remained more or less stable, the genus Vipera has been subdivided into four genera on the basis of molecular genetic data. Of these genera, Daboia contains the former Vipera palaestinae and D. russelii, Macrovipera the species M. lebetina, M. schweizeri and an un-described, basal species from Iran, and Montivipera the former Vipera xanthina and V. raddei complexes. While the genetic diversity in the M. raddei complex is fairly low, it is high in the M. xanthina complex. Th is may give reason to synonymize several taxa in the M. raddei complex, while new taxa can be described in the Turkish M. xanthina complex. Th e number of known species in the Middle Eastern Saw-scaled vipers (genus Echis) must be raised from 2 to 6. Th ese species belong to 3 diff erent species complexes (an Asian, an African and an Arabian complex). A parti...
Zoology in the Middle East, 2016
The Persian Horned Viper (Pseudocerastes persicus) is distributed from northeast Iraq through the Iranian Plateau to western Pakistan with isolated populations in the Hajar Mountains of southeastern Arabia. Like the other members of the genus Pseudocerastes, P. persicus is a sit-and-wait ambush feeder with low vagility, a characteristic that often results in high levels of population differentiation. In order to clarify the level of genetic variability, phylogenetic relationships, and biogeography of the Arabian populations of P. persicus we sequenced 597 base pairs of the mitochondrial cytochrome b of four individuals from the Hajar Mountains in southeastern Arabia and inferred their phylogenetic relationships including 10 samples of P. persicus from Iran and Pakistan, four P. urarachnoides and one P. fieldi downloaded from GenBank. The four Arabian samples are genetically very similar in the gene fragment analysed and are phylogenetically very closely related to populations of P. persicus from coastal south Iran. Biogeographically, it appears that colonisation of the Hajar Mountains by P. persicus took place from Iran very recently, most probably during the last glaciation, when most of the Persian Gulf was above sea level and did not represent a barrier for dispersal.
Molecular phylogenetics and evolution, 2009
We analyze the phylogeny of the medically important and taxonomically unresolved viper genus Echis using four mitochondrial gene fragments. The results show that the populations of the genus fall into four main clades: the Echis carinatus, E. coloratus, E. ocellatus and E. pyramidum groups. The E. pyramidum and E. coloratus groups are sister taxa but the interrelationships of this clade and the E. ocellatus and E. carinatus groups are unresolved. The initial divergence of the genus appears to coincide with the collision between Afro-Arabia and Eurasia, and that between the E. coloratus and E. pyramidum clades appears to be associated with the opening of the Red Sea. Later land connections between Africa and Arabia may have contributed to shaping the distribution of the E. pyramidum complex. The present distribution of E. carinatus may be the result of range expansion from southern India. Taxonomically, our results provide molecular evidence for the validity of Echis omanensis, E. kh...
Zoology in The Middle East, 2016
The Persian Horned Viper (Pseudocerastes persicus) is distributed from northeast Iraq through the Iranian Plateau to western Pakistan with isolated populations in the Hajar Mountains of southeastern Arabia. Like the other members of the genus Pseudocerastes, P. persicus is a sit-and-wait ambush feeder with low vagility, a characteristic that often results in high levels of population differentiation. In order to clarify the level of genetic variability, phylogenetic relationships, and biogeography of the Arabian populations of P. persicus we sequenced 597 base pairs of the mitochondrial cytochrome b of four individuals from the Hajar Mountains in southeastern Arabia and inferred their phylogenetic relationships including 10 samples of P. persicus from Iran and Pakistan, four P. urarachnoides and one P. fieldi downloaded from GenBank. The four Arabian samples are genetically very similar in the gene fragment analysed and are phylogenetically very closely related to populations of P. persicus from coastal south Iran. Biogeographically, it appears that colonisation of the Hajar Mountains by P. persicus took place from Iran very recently, most probably during the last glaciation, when most of the Persian Gulf was above sea level and did not represent a barrier for dispersal.
Iranian Journal of Animal Biosystematics, 2023
Saw scaled vipers of the genus Echis belong to the family Viperidae and subfamily Viperinae. These vipers are widely distributed from East Africa to Southwest and Central Asia. Echis bite is one of the major causes of mortality in the world. Different populations of these medically important snakes have different venom composition, and the relevant antivenom is highly species-specific. Echis has a complex taxonomic history. For many years, only two species were recognized (i.e., Echis coloratus and E. carinatus). Over the past 50 years, the number of species have been raised to 12, of which six species reside in the Middle East. Phylogenetic studies show that the genus Echis fall into four species groups: the E. carinatus, E. coloratus, E. ocellatus and E. pyramidum groups. Until recently, only E. carinatus in Southwest Asia and India and E. coloratus in Arabia were assigned to the Middle East. Several morphological and phylogenetic studies raised the number of Echis species in the Middle East from two to six. These Middle Eastern vipers belong to three different species groups. An Asian, an Arabian and an African group. Distribution and basal split of the genus Echis, likely have been shaped by vicariance and tectonic events, which have separated or connected the land masses. In this study, a brief review on biogeography, taxonomy and distribution of the genus especially in the Middle East is presented.
The Near and Middle East is a hotspot of biodiversity, but the region remains underexplored at the level of genetic biodiversity. Here, we present an extensive molecular phylogeny of the viperid snake genus Montivipera, including all known taxa. Based on nuclear and mitochondrial data, we present novel insights into the phylogeny of the genus and review the status of its constituent species. Maximum likelihood methods revealed a montane origin of Montivipera at 12.3 Mya. We then analyzed factors of mountain viper diversity. Our data support substantial changes in effective population size through Plio–Pleistocene periods. We conclude that climatic oscillations were drivers of allopatric speciation, and that mountain systems of the Near and Middle East have strongly influenced the evolution and survival of taxa, because climatic and topographical heterogeneities induced by mountains have played a crucial role as filters for dispersal and as multiple refugia. The wide diversity of montane microhabitats enabled mountain vipers to retain their ecological niche during climatic pessima. In consequence the varied geological and topographical conditions between refugia favoured genetic isolation and created patterns of species richness resulting in the formation of neoendemic taxa. Our data support high concordance between geographic distributions of Montivipera haplotypes with putative plant refugia.
Mitochondrial DNA Part B
The DNA data of Indian snakes are scanty in the global database, especially from the northeastern states. The present study generated the mitochondrial Cytochrome b gene information of two morphologically identified deadly elapid species from Mizoram. Both, the King Cobra (Ophiophagus hannah) and Banded Krait (Bungarus fasciatus) showed monophyletic clades in the BA topology and cohesively clustered with the database sequences generated from distant geographical locations. The studied O. hannah depicted 2.7-7.6% K2P genetic distances with the specimens collected from China, Vietnam, and Thailand. Further, the northeast Indian B. fasciatus revealed 3.3-4% K2P genetic distance from Chinese, Vietnamese, Thailand, Indonesian, and Australian specimens. The TCS network showed distinct haplotypes for both the species collected from northeast India. The genetic information of these venomous snakes would be helpful for further rapid identification from the museum as well as from roadkilled specimens, curbing the venom poaching and medical avenues.