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O. Ozoline
Molecular Biology, 2000
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Interaction of spatially separated protein-DNA complexes for control of gene expression: operator conversions
Sankar Adhya
Proceedings of the National Academy of Sciences, 1988
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DNA loops induced by cooperative binding of transcriptional activator proteins and preinitiation complexes
Abbas Nikroo
Proceedings of the National Academy of Sciences, 1995
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Wrapping of DNA around the E.coli RNA polymerase open promoter complex
Martin Guthold
The EMBO Journal, 1999
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Operator-bound GalR dimers close DNA loops by direct interaction: tetramerization and inducer binding
Szabolcs Semsey
The EMBO Journal, 2002
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Transcriptional activation via DNA-looping: visualization of intermediates in the activation pathway of E. coli RNA polymerase·σ54 holoenzyme by scanning force microscopy
Martin Guthold
Journal of Molecular Biology, 1997
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TRANSCRIPTION. Allosteric transcriptional regulation via changes in the overall topology of the core promoter
Ilyas Yildirim
Science (New York, N.Y.), 2015
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Transcriptional Activation via DNA-looping: Visualization of Intermediates in the Activation Pathway of E. coli RNA Polymerases s s54 Holoenzyme by Scanning Force Microscopy
Martin Guthold
J Mol Biol, 1997
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Influence of DNA geometry on transcriptional activation in Escherichia coli
Sylvie Dethiollaz
The EMBO Journal
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Effect of DNA bending in various regions of a consensuslike Escherichia coli promoter on its strengthin vivoand structure of the open complex in vitro
Wojciech Markiewicz
Nucleic Acids Research, 1991
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Indirect read-out of the promoter DNA by RNA polymerase in the closed complex
Neeladri Roy, I. Bera
Nucleic Acids Research, 2013
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Quantitation of interactions between two DNA loops demonstrates loop domain insulation in E. coli cells
Sandip Kumar
Proceedings of the National Academy of Sciences of the United States of America, 2014
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Visualization of intermediary transcription states in the complex between Escherichia coli DNA-dependent RNA polymerases and a promoter-carrying DNA fragment using the gel retardation method
Hermann Heumann
European Journal of Biochemistry, 1986
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An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4
Wilma Ross
Genes & development, 2003
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DNA bending and the initiation of transcription at 54-dependent bacterial promoters
Félix Claverie-Martín
Proceedings of the National Academy of Sciences, 1997
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Interactions of a DNA-bound Transcriptional Activator with the TBP-TFIIA-TFIIB-Promoter Quaternary Complex
Valerie Dion
Journal of Biological Chemistry, 2003
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Organization of Open Complexes at Escherichia coli Promoters. LOCATION OF PROMOTER DNA SITES CLOSE TO REGION 2.5 OF THE sigma 70 SUBUNIT OF RNA POLYMERASE
Stephen Minchin
Journal of Biological Chemistry, 1999
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DNA Bending and the Initiation of Transcription at sigma 54Dependent Bacterial Promoters
Manuel Carmona
Proceedings of The National Academy of Sciences, 1997
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RNA polymerase gate loop guides the nontemplate DNA strand in transcription complexes
Yuri Nedialkov
Proceedings of the National Academy of Sciences
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What Controls DNA Looping?
Andrew Colasanti
International Journal of Molecular Sciences, 2014
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Interconvertible Lac Repressor–DNA Loops Revealed by Single-Molecule Experiments
Martin Guthold
PLoS Biology, 2008
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Topography of intermediates in transcription initiation of E.coli
Hermann Heumann
The EMBO journal, 1990
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Activation of in vitro transcription and topology of closed DNA domains
Micaela Caserta
Journal of Biological Chemistry
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Base Flipping in Open Complex Formation at Bacterial Promoters
Pieter Dehaseth
Biomolecules, 2015
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Concentration and Length Dependence of DNA Looping in Transcriptional Regulation
Hernan Garcia
PLOS One, 2008
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Flexibility of the DNA enhances promoter affinity of Escherichia coli RNA polymerase
Hermann Heumann
The EMBO Journal, 1991
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Influence of the sequence-dependent flexure of DNA on transcription in E.coli
Peter Molloy
Nucleic Acids Research, 1989
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Mechanism of Bacterial Transcription Initiation: RNA Polymerase - Promoter Binding, Isomerization to Initiation-Competent Open Complexes, and Initiation of RNA Synthesis
Pieter Dehaseth
Journal of Molecular Biology, 2011
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Weak operator binding enhances simulated lac repressor-mediated DNA looping
Andrew Colasanti
Biopolymers, 2013
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Plasticity in repressor-DNA interactions neutralizes loss of symmetry in bipartite operators
Deepak Nair
Journal of Biological Chemistry, 2015
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Two modes of transcription initiation in vitro at the rrnB P1 promoter of Escherichia coli. J Biol Chem 268 : 23477-23482
Valery Sagitov, Sergei Borukhov
Journal of Biological Chemistry
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Strong cooperativity and inhibitory effects in DNA multi-looping processes
Miguel Rubi
2009
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DNA Structure and Promoter Engineering
Manju Bansal, Rajesh Yella, Aditya Kumar
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Single DNA Molecule Analysis of Transcription Complexes
Martin Guthold
Methods in Enzymology, 2003
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FRET Characterization of DNA Wrapping in Closed and Open Escherichia coli RNA Polymerase - λPR Promoter Complexes
Munish Chhabra
Biochemistry, 2016
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