Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues (original) (raw)

Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between ‘+ 1’ and ‘+ 16’ on the mRNA, downstream from the decoding site

Jutta Rinke-Appel

Nucleic Acids Research, 1993

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The decoding region of 16S RNA; a cross-linking study of the ribosomal A, P and E sites using tRNA derivatized at position 32 in the anticodon loop

Philip J Mitchell

The EMBO journal, 1994

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Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine -Dalgarno sequence; a site-directed cross-linking study

Jutta Rinke-Appel

Nucleic Acids Research, 1994

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The path of mRNA through the Escherichia coli ribosome; site-directed cross-linking of mRNA analogues carrying a photo-reactive label at various points 3′ to the decoding site

Jutta Rinke-Appel

The EMBO Journal, 1991

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How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography

Alexander Spirin

Nucleic Acids Research, 1992

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Arrangement of mRNA at the Decoding Site of Human Ribosomes. 18S rRNA Nucleotides and Ribosomal Proteins Cross-Linked to Oligouridylate Derivatives with Alkylating Groups at Either the 3' or the 5' Termini

Alexey Malygin

European Journal of Biochemistry, 1994

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Nature of the ribosomal mRNA track: Analysis of ribosome-binding sites containing different sequences and secondary structures

Larry Gold

Biochemistry, 1993

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Positioning of mRNA codons with respect to 18S rRNA at the P and E sites of human ribosome

Mariya Meschaninova

Biochimica et biophysica acta (N), 2003

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The localization of multiple sites on 16S RNA which are cross-linked to proteins S7 and S8 in Escherichia coli 30S ribosomal subunits by treatment with 2-iminothiolane

Iwona Wower

Nucleic Acids Research, 1983

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Mechanism of translocation: relative arrangement of tRNA and mRNA on the ribosome

Andrea Barta

Proceedings of the National Academy of Sciences, 1980

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Multiple crosslinks of proteins S7, S9, S13 to domains 3 and 4 of 16S RNA in the 30S particle

Eliane Hajnsdorf

Nucleic Acids Research, 1986

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Regions of 16S Ribosomal RNA Proximal to Transfer RNA Bound at the P-Site of Escherichia coli Ribosomes †

Michael van Waes

Biochemistry, 1998

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Arrangement of 3′-terminus of tRNA on the human ribosome as revealed from cross-linking data

Codjo Hountondji, Galina Karpova

Biochimie, 2008

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Regions of 23 S Ribosomal RNA Proximal to Transfer RNA bound at the P and E Sites

Michael van Waes

Journal of Molecular Biology, 1995

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Nucleotides of 18S rRNA surrounding mRNA at the decoding site of translating human ribosome as revealed from the cross-linking data

natalia matassova

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, 1998

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Contacts between the growing peptide chain and the 23S RNA in the 50S ribosomal subunit

D. Bochkariov

Nucleic Acids Research, 1994

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Interactions of the ribosome with mRNA and tRNA

Marat Yusupov, Gulnara Yusupova

Current Opinion in Structural Biology, 2010

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Effects of site-directed mutations in the central domain of 16 S ribosomal RNA upon ribosomal protein binding, RNA processing and 30 S subunit assembly

Christian Zwieb

Journal of Molecular Biology, 1984

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Site-directed cross-linking studies on the E.coli tRNA ribosome complex: determination of sites labelled with an aromatic azide attached to the variable loop or aminoacyl group of tRNA

Philip J Mitchell

Nucleic Acids Research, 1993

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Involvement of Helix 34 of 16 S rRNA in Decoding and Translocation on the Ribosome

Petr Sergiev

Journal of Biological Chemistry, 2006

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Movement of the Decoding Region of the 16S Ribosomal RNA Accompanies tRNA Translocation

Rajendra Agrawal

Journal of Molecular Biology, 2000

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Studies on the structure and function of 16S ribosomal RNA using structure-specific chemical probes

Stephen Douthwaite

Journal of Biosciences, 1985

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Selective isolation and detailed analysis of intra-RNA cross-links induced in the large ribosomal subunit of E. coli: a model for the tertiary structure of the tRNA binding domain in 23S RNA

Philip J Mitchell

Nucleic Acids Research, 1990

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Base-Pairing between 23S rRNA and tRNA in the Ribosomal A Site

Rachel Green

Molecular Cell, 1999

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Role of 16-S RNA in Ribosome Messenger Recognition

Gerrit Veeneman

European Journal of Biochemistry, 1980

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How the ribosome moves along the mRNA during protein synthesis

Eugene Skripkin

Journal of Biological Chemistry, 1994

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Structural basis for messenger RNA movement on the ribosome

Marat Yusupov

Nature, 2006

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mRNA 3’ of the A Site Bound Codon is Located Close to Protein S3 on the Human 80S Ribosome

Elena Popugaeva

RNA Biology, 2006

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Conformation of 4.5S RNA in the signal recognition particle and on the 30S ribosomal subunit

Marina Rodnina

RNA, 2005

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2′-OH of mRNA are critical for the binding of its codons at the 40S ribosomal P site but not at the mRNA entry site

Alexey Malygin

FEBS Letters, 2012

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Ribosomal proteins contacting with deacylated tRNA in the S-site of the translating ribosome

G. Abdurashidova

FEBS Letters, 1981

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Interaction of the 3\u27 end of tRNA with the ribosome: Methods and modifications of the 3\u27 end

Narasimham Jammi

1998

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The environment of 5S rRNA in the ribosome: cross-links to 23S rRNA from sites within helices II and III of the 5S molecule

Alexey Bogdanov

Nucleic Acids Research, 1999

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