A widespread family of bacterial cell wall assembly proteins (original) (raw)
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International Journal of Molecular Sciences
The cell walls of Gram-positive bacteria contain a variety of glycopolymers (CWGPs), a significant proportion of which are covalently linked to the peptidoglycan (PGN) scaffolding structure. Prominent CWGPs include wall teichoic acids of Staphylococcus aureus, streptococcal capsules, mycobacterial arabinogalactan, and rhamnose-containing polysaccharides of lactic acid bacteria. CWGPs serve important roles in bacterial cellular functions, morphology, and virulence. Despite evident differences in composition, structure and underlaying biosynthesis pathways, the final ligation step of CWGPs to the PGN backbone involves a conserved class of enzymes—the LytR-CpsA-Psr (LCP) transferases. Typically, the enzymes are present in multiple copies displaying partly functional redundancy and/or preference for a distinct CWGP type. LCP enzymes require a lipid-phosphate-linked glycan precursor substrate and catalyse, with a certain degree of promiscuity, CWGP transfer to PGN of different maturation...
Distinct and essential morphogenic functions for wall- and lipo-teichoic acids in Bacillus subtilis
The EMBO Journal, 2009
Teichoic acids (TAs) are anionic polymers that constitute a major component of the cell wall in most Gram-positive bacteria. Despite decades of study, their function has remained unclear. TAs are covalently linked either to the cell wall peptidoglycan (wall TA (WTA)) or to the membrane (lipo-TA (LTA)). We have characterized the key enzyme of LTA synthesis in Bacillus subtilis, LTA synthase (LtaS). We show that LTA is needed for divalent cation homoeostasis and that its absence has severe effects on cell morphogenesis and cell division. Inactivation of both LTA and WTA is lethal and comparison of the individual mutants suggests that they have differentiated roles in elongation (WTA) and division (LTA). B. subtilis has four ltaS paralogues and we show how their roles are partially differentiated. Two paralogues have a redundant role in LTA synthesis during sporulation and their absence gives a novel absolute block in sporulation. The crystal structure of the extracytoplasmic part of LtaS, solved at 2.4-Å resolution, reveals a phosphorylated threonine residue, which provides clues about the catalytic mechanism and identifies the active site of the enzyme.
Cell wall-polypeptide complexes in Bacillus subtilis
Carbohydrate Research, 1983
The cell surface of Bacillus subtilis contains several peptidoglycan-associated polypeptides. Cell walls were labeled with 1251 or %, and the products were digested with lysozyme. When the digests were chromatographed on Sephacryl S-200, peaks of radioactivity corresponding to molecular weights of 240,000,125,000, 20,000, 17,000, and 15,000 were observed. The walls solubilized by lysozyme were also subjected to sodium dodecyl sulfate-poly(acrylamide) gel electrophoresis, and radioactive bands corresponding to apparent molecular weights of 24,000, 22,000, and 19,000 were found. Isoelectric focusing of the digests revealed the presence of a component having an isoelectric point of 3.7, and, possibly, of minor components having isoelectric points of 4.7 and 6.1. Proteases, including trypsin, subtilisin, and pronase, removed some of the radioactivity from [3"S]-labeled walls. Significant proportions of label from [35S]walls were solubilized by the peptide-bond-breaking agents cyanogen bromide and N-bromosuccinimide. Small proportions of radioactivity were released from labeled walls by hydroxylamine and trichloroacetic acid. Direct, amino acid analyses of the walls showed the presence of several amino acids not commonly regarded as constituents of peptidoglycan. Cell walls from a protease-deficient mutant, and from a wall preparation enriched in cell poles, contained similar proportions of amino acids. In addition. wall preparations from an autolysin-deficient mutant, and walls from protease hyper-producing strains, contained amino acids that could not be removed by rigorous extraction-procedures. The results suggest that the cell walls of Bacillus subtilis contain tightly, or covalently, bound protein molecules or polypeptides that are refractory to removal by denaturants.
A 1.2-Å snapshot of the final step of bacterial cell wall biosynthesis
Proceedings of the National Academy of Sciences, 2001
The cell wall imparts structural strength and shape to bacteria. It is made up of polymeric glycan chains with peptide branches that are cross-linked to form the cell wall. The cross-linking reaction, catalyzed by transpeptidases, is the last step in cell wall biosynthesis. These enzymes are members of the family of penicillin-binding proteins, the targets of β-lactam antibiotics. We report herein the structure of a penicillin-binding protein complexed with a cephalosporin designed to probe the mechanism of the cross-linking reaction catalyzed by transpeptidases. The 1.2-Å resolution x-ray structure of this cephalosporin bound to the active site of the bifunctional serine type d -alanyl- d -alanine carboxypeptidase/transpeptidase (EC 3.4.16.4 ) from Streptomyces sp. strain R61 reveals how the two peptide strands from the polymeric substrates are sequestered in the active site of a transpeptidase. The structure of this complex provides a snapshot of the enzyme and the bound cell wall...
Cell wall assembly in Bacillus subtilis: how spirals and spaces challenge paradigms
Molecular Microbiology, 2006
Although the bacterial cell wall has been the subject of decades of investigation, recent studies continue to generate novel and controversial models of its synthesis and assembly. Here we compare and contrast the transcompartmental biosyntheses of peptidoglycan and teichoic acid in Bacillus subtilis . In addition, the current paradigms of B. subtilis wall assembly and structure are distinguished from emerging models of murein insertion and organization. We discuss evidence for the directed, cytoskeleton-dependent insertion of nascent peptidoglycan and the existence of a periplasmic compartment. Furthermore, we summarize the challenges these findings represent to the existing paradigm of murein insertion. Finally, motivated by these new developments, we discuss outstanding issues that remain to be addressed and suggest research directions that may contribute to a better understanding of cell wall assembly in B. subtilis .
Cell wall structure and function in lactic acid bacteria
Microbial Cell Factories, 2014
The cell wall of Gram-positive bacteria is a complex assemblage of glycopolymers and proteins. It consists of a thick peptidoglycan sacculus that surrounds the cytoplasmic membrane and that is decorated with teichoic acids, polysaccharides, and proteins. It plays a major role in bacterial physiology since it maintains cell shape and integrity during growth and division; in addition, it acts as the interface between the bacterium and its environment. Lactic acid bacteria (LAB) are traditionally and widely used to ferment food, and they are also the subject of more and more research because of their potential health-related benefits. It is now recognized that understanding the composition, structure, and properties of LAB cell walls is a crucial part of developing technological and health applications using these bacteria. In this review, we examine the different components of the Gram-positive cell wall: peptidoglycan, teichoic acids, polysaccharides, and proteins. We present recent findings regarding the structure and function of these complex compounds, results that have emerged thanks to the tandem development of structural analysis and whole genome sequencing. Although general structures and biosynthesis pathways are conserved among Grampositive bacteria, studies have revealed that LAB cell walls demonstrate unique properties; these studies have yielded some notable, fundamental, and novel findings. Given the potential of this research to contribute to future applied strategies, in our discussion of the role played by cell wall components in LAB physiology, we pay special attention to the mechanisms controlling bacterial autolysis, bacterial sensitivity to bacteriophages and the mechanisms underlying interactions between probiotic bacteria and their hosts. Schematic representation of the structure of peptidoglycan. This is the type of structure found in L. lactis and numerous lactobacilli. In other LAB species, the nature of the interpeptide cross-bridge (depicted as D-Asp/D-Asn in the figure) may vary, the third diamino acid (L-Lys) may be replaced by mDAP or L-ornithine, and the D-Ala in position five of the stem peptide may be replaced by D-lactate. Possible modifications of the PG structure, such as O-acetylation (O-Ac), N-deacetylation (leading to GlcNH 2 ), or amidation (NH 2 ), are indicated in red. The cleavage sites of the different classes of PG hydrolases are indicated with arrows.
Deciphering the Nature of Enzymatic Modifications of Bacterial Cell Walls
ChemBioChem, 2017
The major constituent of bacterial cell wall is peptidoglycan, which in its crosslinked form is a polymer of considerable complexity that encases the entire bacterium. A functional cell wall is indispensable for the survival of the organism. There are several dozens of enzymes that assemble and disassemble the peptidoglycan dynamically within each bacterial generation. Understanding of the nature of these transformations is critical knowledge on these events. Octasaccharide peptidoglycans were prepared and studied with seven recombinant cell-wall-active enzymes (SltB1, MltB, RlpA, mutanolysin, AmpDh2, AmpDh3 and PBP5). With the use of highly sensitive mass spectrometry methods, we describe the breadth of reactions that these enzymes catalyze with the peptidoglycan and shed light on the nature of the cell-wall alteration performed by these enzymes. The enzymes exhibit broadly distinct preferences for their substrate peptidoglycans in the reactions that they catalyze. TOC Image Homogeneous and heterogeneous octasaccharide peptidoglycans were synthesized for characterization of reactions of seven enzymes that modify the bacterial cell wall-SltB1, MltB, RlpA, mutanolysin, AmpDh2, AmpDh3, and PBP5. Three lytic transglycosylases and mutanolysin exhibit broadly distinct preferences for their substrate peptidoglycans in the reactions that they catalyze.
Structural basis of cell wall anchoring by SLH domains in Paenibacillus alvei
Nature communications, 2018
Self-assembling protein surface (S-) layers are common cell envelope structures of prokaryotes and have critical roles from structural maintenance to virulence. S-layers of Gram-positive bacteria are often attached through the interaction of S-layer homology (SLH) domain trimers with peptidoglycan-linked secondary cell wall polymers (SCWPs). Here we present an in-depth characterization of this interaction, with co-crystal structures of the three consecutive SLH domains from the Paenibacillus alvei S-layer protein SpaA with defined SCWP ligands. The most highly conserved SLH domain residue SLH-Gly29 is shown to enable a peptide backbone flip essential for SCWP binding in both biophysical and cellular experiments. Furthermore, we find that a significant domain movement mediates binding by two different sites in the SLH domain trimer, which may allow anchoring readjustment to relieve S-layer strain caused by cell growth and division.
Regulation of cell wall morphogenesis in Bacillus subtilis by recruitment of PBP1 to the MreB helix
Molecular Microbiology, 2009
The bacterial actin homologue MreB plays a key role in cell morphogenesis. In Bacillus subtilis MreB is essential under normal growth conditions and mreB mutants are defective in the control of cell diameter. However, the precise role of MreB is still unclear. Analysis of the lethal phenotypic consequences of mreB disruption revealed an unusual bulging phenotype that precedes cell death. A similar phenotype was seen in wild-type cells at very low Mg 2+ concentrations. We found that inactivation of the major bi-functional penicillin-binding protein (PBP) PBP1 of B. subtilis restored the viability of an mreB null mutant as well as preventing bulging in both mutant and wild-type backgrounds. Bulging was associated with delocalization of PBP1. We show that the normal pattern of localization of PBP1 is dependent on MreB and that the proteins can physically interact using in vivo pull-down and bacterial twohybrid approaches. Interactions between MreB and several other PBPs were also detected. Our results suggest that MreB filaments associate directly with the peptidoglycan biosynthetic machinery in B. subtilis as part of the mechanism that brings about controlled cell elongation.