original ) (raw )The β-barrel finder (BBF) program, allowing identification of outer membrane β-barrel proteins encoded within prokaryotic genomes
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Protein Science, 2009
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OMPdb: a Database of β-Barrel Outer Membrane Proteins From Gram-Negative Bacteria
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Nucleic Acids Research, 2011
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Structure and function of bacterial outer membrane proteins: barrels in a nutshell
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Molecular Microbiology, 2000
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OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins
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Frontiers in Bioinformatics, 2021
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PRED-TMBB: a Web Server for Predicting the Topology of {Beta}-Barrel Outer Membrane Proteins
Pantelis Bagos
Nucleic acids …, 2004
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Gram-negative outer membrane proteins with multiple β-barrel domains
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PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins
H. Bigelow
Nucleic Acids Research, 2006
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New Escherichia coli outer membrane proteins identified through prediction and experimental verification
rita casadio
Protein Science, 2006
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beta-Barrel Transmembrane Proteins: Geometric Modelling, Detection of Transmembrane Region, and Structural Properties
Pantelis Bagos
Computational Biology and …, 2006
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Accurate prediction of transmembraneβ-barrel proteins from sequences
sikander hayat
2014
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Protein-translocating outer membrane porins of Gram-negative bacteria
Yufeng Zhai
Biochimica et Biophysica Acta (BBA) - Biomembranes, 2002
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Landscape of Eukaryotic Transmembrane Beta Barrel Proteins
ahmed fouad
Journal of Proteome Research, 2020
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Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria
Piero Fariselli
Protein Science, 2003
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Assembly of β-barrel proteins into bacterial outer membranes
Chaille Webb
Biochimica et biophysica acta, 2014
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Structural and Functional Roles of the Surface-Exposed Loops of the beta-Barrel Membrane Protein OmpA from Escherichia coli
Ralf KOEBNIK
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The structural biology of b-barrel membrane proteins: a summary of recent reports
Jamin Koo
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BOCTOPUS: improved topology prediction of transmembrane β barrel proteins
sikander hayat
Bioinformatics, 2012
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A Hidden Markov Model capable of predicting and discriminating β-barrel outer membrane proteins
Pantelis Bagos
2004
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A Hidden Markov Model Method, Capable of Predicting and Discriminating beta-Barrel Outer Membrane Proteins
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BMC …, 2004
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Cloning of the structural gene (ompA) for an integral outer membrane protein of Escherichia coli K-12
Hans-dieter Royer
Proceedings of the National Academy of Sciences, 1979
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A Hidden Markov Model Method, Capable of Predicting and Discriminating β-Barrel Outer Membrane Proteins
Pantelis Bagos
BMC …, 2004
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Comparative analysis and "expression space" coverage of the production of prokaryotic membrane proteins for structural genomics
Sachin Surade
Protein science : a publication of the Protein Society, 2006
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Insights into the structure and assembly of Escherichia coli outer membrane protein A
Rosetta Reusch
The FEBS journal, 2012
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Predicting transmembrane beta-barrels in proteomes
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Nucleic Acids Research, 2004
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Versatile in vitro system to study translocation and functional integration of bacterial outer membrane proteins
Françoise Jacob-dubuisson
Nature communications, 2014
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transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels
Jean-marc Steyaert
Nucleic Acids Research, 2006
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The bacterial porin superfamily: sequence alignment and structure prediction
franc pattus
Molecular Microbiology, 1991
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In Silico Structure and Sequence Analysis of Bacterial Porins and Specific Diffusion Channels for Hydrophilic Molecules: Conservation, Multimericity and Multifunctionality
Hilde S Vollan , Tone Tannæs
International Journal of Molecular Sciences, 2016
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Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions
sikander hayat
Bioinformatics, 2012
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Two-dimensional electrophoresis and peptide mass fingerprinting of bacterial outer membrane proteins
Philip Andrews
ELECTROPHORESIS, 2001
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Cloned structural gene (ompA) for an integral outer membrane protein of Escherichia coli K-12
Erhard Bremer
MGG Molecular & General Genetics, 1980
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Collection and characterisation of bacterial membrane proteins
Christopher Hoyle
Febs Letters, 2003
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Proteomic analysis of the Escherichia coli outer membrane
Ben Herbert
European Journal of Biochemistry, 2000
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Major outer membrane proteins of Escherichia coli K-12: Evidence for Protein II* being a transmembrane protein
Ben Lugtenberg
FEBS Letters, 1978
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Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method
István Simon
Protein Engineering Design and Selection, 1997
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