OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins (original) (raw)
OMPdb: a Database of β-Barrel Outer Membrane Proteins From Gram-Negative Bacteria
Pantelis Bagos
Nucleic Acids Research, 2011
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The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes
Yufeng Zhai
Protein science : a publication of the Protein Society, 2002
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The β-barrel finder (BBF) program, allowing identification of outer membrane β-barrel proteins encoded within prokaryotic genomes
Yufeng Zhai
Protein Science, 2009
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PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins
H. Bigelow
Nucleic Acids Research, 2006
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Landscape of Eukaryotic Transmembrane Beta Barrel Proteins
ahmed fouad
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Gram-negative outer membrane proteins with multiple β-barrel domains
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PRED-TMBB: a Web Server for Predicting the Topology of {Beta}-Barrel Outer Membrane Proteins
Pantelis Bagos
Nucleic acids …, 2004
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Structure and function of bacterial outer membrane proteins: barrels in a nutshell
Ralf KOEBNIK
Molecular Microbiology, 2000
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Accurate prediction of transmembraneβ-barrel proteins from sequences
sikander hayat
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A Hidden Markov Model capable of predicting and discriminating β-barrel outer membrane proteins
Pantelis Bagos
2004
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A Hidden Markov Model Method, Capable of Predicting and Discriminating beta-Barrel Outer Membrane Proteins
Pantelis Bagos
BMC …, 2004
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A Hidden Markov Model Method, Capable of Predicting and Discriminating β-Barrel Outer Membrane Proteins
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Assembly of β-barrel proteins into bacterial outer membranes
Chaille Webb
Biochimica et biophysica acta, 2014
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beta-Barrel Transmembrane Proteins: Geometric Modelling, Detection of Transmembrane Region, and Structural Properties
Pantelis Bagos
Computational Biology and …, 2006
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BOCTOPUS: improved topology prediction of transmembrane β barrel proteins
sikander hayat
Bioinformatics, 2012
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Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria
Piero Fariselli
Protein Science, 2003
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The structural biology of b-barrel membrane proteins: a summary of recent reports
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Discovery of a conserved rule behind the assembly of β-barrel membrane proteins
Chaille Webb
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New Escherichia coli outer membrane proteins identified through prediction and experimental verification
rita casadio
Protein Science, 2006
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Discovery of an archetypal protein transport system in bacterial outer membranes
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Versatile in vitro system to study translocation and functional integration of bacterial outer membrane proteins
Françoise Jacob-dubuisson
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TMBHMM: A frequency profile based HMM for predicting the topology of transmembrane beta barrel proteins and the exposure status of transmembrane residues
Volkhard Helms
Biochimica Et Biophysica Acta-proteins and Proteomics, 2011
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transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels
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TMBpro: secondary structure, -contact and tertiary structure prediction of transmembrane -barrel proteins
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Bioinformatics, 2008
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PDBTM: Protein Data Bank of transmembrane proteins after 8 years
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Nucleic Acids Research, 2013
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PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins
Stavros Hamodrakas
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Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions
sikander hayat
Bioinformatics, 2012
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Predicting transmembrane beta-barrels in proteomes
Dariusz Przybylski
2004
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Structural and Functional Roles of the Surface-Exposed Loops of the beta-Barrel Membrane Protein OmpA from Escherichia coli
Ralf KOEBNIK
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Protein-translocating outer membrane porins of Gram-negative bacteria
Yufeng Zhai
Biochimica et Biophysica Acta (BBA) - Biomembranes, 2002
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EBGW_OMP: A sequence-based method for accurate prediction of outer membrane proteins
Fuquan Hu
2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014
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TOPDB: topology data bank of transmembrane proteins
Gábor Tusnády
Nucleic Acids Research, 2007
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PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank
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Nucleic Acids Research, 2004
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