Two modes of transcription initiation in vitro at the rrnB P1 promoter of Escherichia coli. J Biol Chem 268 : 23477-23482
Valery Sagitov, Sergei Borukhov
Journal of Biological Chemistry
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Mechanism of Bacterial Transcription Initiation: RNA Polymerase - Promoter Binding, Isomerization to Initiation-Competent Open Complexes, and Initiation of RNA Synthesis
Pieter Dehaseth
Journal of Molecular Biology, 2011
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RNA polymerase-promoter interactions determining different stability of the Escherichia coli and Thermus aquaticus transcription initiation complexes
Vladimir Mekler
Nucleic Acids Research, 2012
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Mechanism of transcription initiation and promoter escape by E . coli RNA polymerase
Munish Chhabra
Proceedings of the National Academy of Sciences of the United States of America, 2017
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DNA functional groups required for formation of open complexes between Escherichia coli RNA polymerase and the λ P(R) promoter. Identification via base analog substitutions
Pieter Dehaseth
Journal of Biological Chemistry
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Coupling of downstream RNA polymerase-promoter interactions with formation of catalytically competent transcription initiation complex
Sergei Borukhov
Journal of molecular biology, 2014
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Specificity of DNA–Protein Interactions within Transcription Complexes of Escherichia coli
O. Ozoline
Molecular Biology, 2000
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Enhancer-dependent transcription by bacterial RNA polymerase: the beta subunit downstream lobe is used by sigma 54 during open promoter complex formation
Konstantin Severinov
Methods in enzymology, 2003
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An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4
Wilma Ross
Genes & development, 2003
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Initiation Complexes of Escherichia coli RNA Polymerase and T7 DNA
David McConnell
European Journal of Biochemistry, 1973
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Visualization of intermediary transcription states in the complex between Escherichia coli DNA-dependent RNA polymerases and a promoter-carrying DNA fragment using the gel retardation method
Hermann Heumann
European Journal of Biochemistry, 1986
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Release of the .sigma. subunit from Escherichia coli RNA polymerase transcription complexes is dependent on the promoter sequence
Thomas Stackhouse
Biochemistry, 1989
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Evidence for a Tyrosine–Adenine Stacking Interaction and for a Short-lived Open Intermediate Subsequent to Initial Binding of Escherichia coli RNA Polymerase to Promoter DNA
Pieter Dehaseth
Journal of Molecular Biology, 2009
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In Vitro Studies of Transcript Initiation by Escherichia coli RNA Polymerase. 2. Formation and Characterization of Two Distinct Classes of Initial Transcribing Complexes
Caroline Kane
Biochemistry, 2003
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Flexibility of the DNA enhances promoter affinity of Escherichia coli RNA polymerase
Hermann Heumann
The EMBO Journal, 1991
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In Vitro Studies of Transcript Initiation by Escherichia coli RNA Polymerase. 1. RNA Chain Initiation, Abortive Initiation, and Promoter Escape at Three Bacteriophage Promoters †
Lilian Hsu, Nam Vo
Biochemistry, 2003
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Active Escherichia coli Transcription Elongation Complexes are Functionally Homogeneous
Zvi Pasman
Journal of Molecular Biology, 2002
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RNA-polymerase binding at the promoters of the rRNA genes of Escherichia coli
Ibolya Kiss
Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, 1980
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rRNA Promoter Regulation by Nonoptimal Binding of σ Region 1.2: An Additional Recognition Element for RNA Polymerase
Wilma Ross
Cell, 2006
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In Vitro Studies of Transcript Initiation by Escherichia coli RNA Polymerase. 3. Influences of Individual DNA Elements within the Promoter Recognition Region on Abortive Initiation and Promoter Escape
Caroline Kane
Biochemistry, 2003
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The effect of macromolecular crowding on single-round transcription by E. coli RNA polymerase
Shimon Weiss
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Equilibrium and Kinetic Parameters of the Sequence-Specific Interaction of Escherichia c oli RNA Polymerase with Nontemplate Strand Oligodeoxyribonucleotides †
Pieter Dehaseth, M. Strainic
Biochemistry, 1998
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An aromatic residue switch in enhancer-dependent bacterial RNA polymerase controls transcription intermediate complex activity
Robert Weinzierl
Nucleic Acids Research, 2013
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Conformational changes of E. coli RNA polymerase during transcription initiation
Ranjan Sen
Biophysical Chemistry, 1996
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Stability of ternary transcription complexes of vaccinia virus RNA polymerase at promoter-proximal positions
James Hagler
Journal of Biological Chemistry, 1992
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Alteration of the −35 and −10 sequences and deletion the upstream sequence of the −35 region of the promoter A1 of the phage T7 in dsDNA confirm the contribution of non-specific interactions with E. coli RNA polymerase to the transcription initiation process
Katarzyna Turecka
Frontiers in Molecular Biosciences, 2024
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Promoter recognition by Escherichia coli RNA polymerase. Effects of single base pair deletions and insertions in the spacer DNA separating the -10 and -35 regions are dependent on spacer DNA sequence
Pieter Dehaseth, M. Strainic
Biochemistry, 1993
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Positioning of σS, the stationary phase σ factor, in Escherichia coli RNA polymerase–promoter open complexes
Annie Kolb
The EMBO Journal, 1999
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E. coli RNA polymerase interacts homologously with two different promoters
W. Gilbert
Cell, 1980
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RNA polymerase-promoter interactions: the comings and goings of RNA polymerase
Pieter Dehaseth
Journal of bacteriology, 1998
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The Escherichia coli RNA Polymerasemiddle dotAnti-sigma 70 AsiA Complex Utilizes alpha -Carboxyl-terminal Domain Upstream Promoter Contacts to Transcribe from a -10/-35 Promoter
Annie Kolb
Journal of Biological Chemistry, 2001
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Positionally exact initiation is required for the formation of a stable RNA polymerase II transcription complex in vivo
Graham Tebb
The EMBO Journal, 1988
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Spectroscopic Determination of Open Complex Formation at Promoters for Escherichia coli RNA Polymerase †
Pieter Dehaseth
Biochemistry, 1997
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Probing the environment of nascent RNA in Escherichia coli transcription elongation complexes utilizing a new fluorescent ribonucleotide analog
Elizabeth Yuriev
Nucleic Acids Research, 1999
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Reiterative copying by E.coli RNA polymerase during transcription initiation of mutant pBR322 tet promoters
Herbert Boyer
Nucleic Acids Research, 1990
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