Loss of protein interactions and regulatory divergence in yeast whole-genome duplicates (original) (raw)

Identity and divergence of protein domain architectures after the yeast whole-genome duplication event

Luigi Grassi

Molecular BioSystems, 2010

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Ordered structure of the transcription network inherited from the yeast whole-genome duplication

Diana Fusco, Luigi Grassi

BMC Systems Biology, 2010

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The Roles of Whole-Genome and Small-Scale Duplications in the Functional Specialization of Saccharomyces cerevisiae Genes

Christina Toft

PLoS Genetics, 2013

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Comparative analysis indicates regulatory neofunctionalization of yeast duplicates

Itay Tirosh

Genome Biology, 2007

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Genetic interactions reveal the evolutionary trajectories of duplicate genes

Balázs Papp

Molecular Systems Biology, 2010

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Molecular evolution in the yeast transcriptional regulation network

Annette Evangelisti

Journal of Experimental Zoology …, 2004

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Pervasive and persistent redundancy among duplicated genes in yeast

Dmitri Petrov

PLoS genetics, 2008

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Functional Partitioning of Yeast Co-Expression Networks after Genome Duplication

Gavin Conant

PLoS Biology, 2006

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Protein Function, Connectivity, and Duplicability in Yeast

Wen-hsiung Li

Molecular Biology and Evolution, 2005

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Reorganization of Adjacent Gene Relationships in Yeast Genomes by Whole-Genome Duplication and Gene Deletion

Geoffrey Morris, Wen-hsiung Li

Molecular Biology and Evolution, 2006

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Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy

Ran Kafri

Proceedings of The National Academy of Sciences, 2008

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Genomic Background Predicts the Fate of Duplicated Genes: Evidence From the Yeast Genome

Hirohisa Kishino

Genetics, 2004

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Limitations of Gene Duplication Models: Evolution of Modules in Protein Interaction Networks

Frank Emmert-Streib

PLoS ONE, 2012

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Always read the introduction: integrating regulatory and coding sequence evolution in yeast

Annette Evangelisti

2010

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Evidence of Interaction Network Evolution by Whole-Genome Duplications: A Case Study in MADS-Box Proteins

Kerstin Kaufmann

Molecular Biology and Evolution, 2006

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created by whole-genome duplication in yeast

Gavin Conant

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Divergence Pattern of Duplicate Genes in Protein-Protein Interactions Follows the Power Law

Hirohisa Kishino

Molecular Biology and Evolution, 2005

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The Role of Cis-Regulatory Motifs and Genetical Control of Expression in the Divergence of Yeast Duplicate Genes

Lindsey Compton

Molecular Biology and Evolution, 2007

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Functional Redundancy and Expression Divergence among Gene Duplicates in Yeast

zineng yuan

2010

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Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age

Paulien Hogeweg

BMC Evolutionary Biology, 2012

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Convergent evolution of gene networks by single-gene duplications in higher eukaryotes

Stephen Oliver

EMBO reports, 2004

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Unraveling the modular evolution of the yeast protein interaction network

Chaoming Song

2010

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Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms

Alexander Anderson

Journal of the Royal Society, Interface / the Royal Society, 2009

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Neighbor Overlap Is Enriched in the Yeast Interaction Network: Analysis and Implications

Ron Unger

PLoS ONE, 2012

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Evolution of cis-regulatory elements in duplicated genes of yeast

Balázs Papp

Trends in Genetics, 2003

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Local synteny and codon usage contribute to asymmetric sequence divergence of Saccharomyces cerevisiae gene duplicates

Ulfar Bergthorsson

BMC Evolutionary Biology, 2011

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The evolution of gene expression regulatory networks in yeasts

Gaëlle Lelandais

Comptes Rendus Biologies, 2011

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Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences

Eric Weiss

PLoS Computational Biology, 2014

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Gene Duplication and the Structure of Eukaryotic Genomes

Austin Hughes

Genome Research, 2001

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Evolution of the protein interaction network of budding yeast: role of the protein family compatibility constraint

Doochul Kim

Arxiv preprint q-bio/0312009, 2003

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Evolving protein interaction networks through gene duplication

Ricard SOLÉ

Journal of Theoretical Biology, 2003

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Evolution of the yeast protein interaction network

Wen-hsiung Li

Proceedings of the National Academy of Sciences, 2003

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Evolutionary Rate and Duplicability in the Arabidopsis thaliana Protein-Protein Interaction Network

Mario Fares

Genome Biology and Evolution, 2012

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Higher-Order Genomic Organization of Cellular Functions in Yeast

Dani Bar

Journal of Computational Biology, 2009

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