Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer (original) (raw)

Biochemistry, 2001

Kinetic Mechanism of the Hairpin Ribozyme

Journal of Biological Chemistry, 1997

The hairpin ribozyme: structure, assembly and catalysis

Current Opinion in Chemical Biology, 1998

Observation of internal cleavage and ligation reactions of a ribozyme

Timothy D Wilson

Nature Structural & Molecular Biology, 2004

Evidence for the role of active site residues in the hairpin ribozyme from molecular simulations along the reaction path

Pawel Janowski, Hugh Heldenbrand

Journal of the American Chemical Society, 2014

Molecular dynamics in the hairpin ribozyme: Calculational and experimental aspects

OMONDI OCHIENG

2015

Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme

Proceedings of the National Academy of Sciences, 1998

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

Nature structural biology, 1999

QM/MM Studies of Hairpin Ribozyme Self-Cleavage Suggest the Feasibility of Multiple Competing Reaction Mechanisms

Vojtěch Mlýnský, Nils Walter

The Journal of Physical Chemistry B, 2011

Inter-domain cross-linking and molecular modelling of the hairpin ribozyme

E. Westhof

Journal of Molecular Biology, 1997

Inter-domain cross-linking and molecular modelling of the hairpin ribozyme 1 1 Edited by A. R. Fresh

Eric Westhof

Journal of Molecular Biology, 1997

The hairpin ribozyme substrate binding-domain: A highly constrained D-shaped conformation 1 1 Edited by J. A. Doudna

Journal of Molecular Biology, 2001

Articles The Solvent-Protected Core of the Hairpin Ribozyme-Substrate Complex†

1998

Cation-Specific Structural Accommodation within a Catalytic RNA

Biochemistry, 2006

The Hairpin Ribozyme

Nucleic Acids and Molecular Biology, 1994

The hairpin ribozyme substrate binding-domain: A highly constrained D-shaped conformation

Journal of Molecular Biology, 2001

The hairpin ribozyme substrate binding-domain: A highly constrained D-shaped conformation1

Journal of Molecular Biology, 2001

Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study

Alastair Murchie

The EMBO journal, 1997

Sequence elements outside the catalytic core of natural hairpin ribozymes modulate the reactions differentially

Gerhard Steger

Biological Chemistry, 2011

Global Structure and Flexibility of Hairpin Ribozymes with Extended Terminal Helices

Dietmar Porschke, Nils Walter

Journal of Molecular Biology, 1999

Correlating Structural Dynamics and Function in Single Ribozyme Molecules

Steven Chu

Science, 2002

Molecular dynamics suggest multifunctionality of an adenine imino group in acid-base catalysis of the hairpin ribozyme

RNA, 2009

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

Alastair Murchie

Molecular cell, 1998

Single-Atom Imino Substitutions at A9 and A10 Reveal Distinct Effects on the Fold and Function of the Hairpin Ribozyme Catalytic Core

Robert Spitale

Biochemistry, 2009

The Solvent-Protected Core of the Hairpin Ribozyme−Substrate Complex †

Biochemistry, 1998

Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H⁺ Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme

Journal of Physical Chemistry B, 2010

Ionic requirements for RNA binding, cleavage, and ligation by the hairpin ribozyme

Biochemistry, 1993

Extensive Molecular Dynamics Simulations Showing That Canonical G8 and Protonated A38H + Forms Are Most Consistent with Crystal Structures of Hairpin Ribozyme

The Journal of Physical Chemistry B, 2010