A DNA sequence distance measure approach for phylogenetic tree construction (original) (raw)

A new sequence distance measure for phylogenetic tree construction

k sayood

Bioinformatics, 2003

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LifePrint: a novel k-tuple distance method for construction of phylogenetic trees

Rosaura Palma

Advances and Applications in Bioinformatics and Chemistry, 2011

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A New Alignment Free Method for Phylogenetic Tree Construction

Geetika Munjal

International Journal of Database Theory and Application

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Multiple Sequence Alignment Based Method for Construction of Phylogenetic Trees

IJCSMC Journal

IJCSMC, 2019

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Proper Distance Metrics for Phylogenetic Analysis Using Complete Genomes without Sequence Alignment

Chu Hou

International Journal of Molecular Sciences, 2010

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A Detailed Survey on Approaches of Phylogenetic Analysis

Lavanya Kakimallaiah, IJCSMC Journal

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Assessment of Protein Distance Measures and Tree-Building Methods for Phylogenetic Tree Reconstruction

Lars Arvestad

Molecular Biology and Evolution, 2005

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Phylogenetic tree construction using trinucleotide usage profile (TUP)

Henry Horng-Shing Lu

BMC Bioinformatics, 2016

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Simple method for constructing phylogenetic trees from distance matrices

Wen-hsiung Li

Proceedings of the National Academy of Sciences, 1981

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

Masatoshi Nei

Molecular biology and evolution, 1987

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A new measure of dissimilarity and fuzzy linear programming model to construct phylogenetic network among DNA sequences

IAEES Publications, Mostafa Faghani

2019

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A Comparative study of Multiple Sequence Alignment Tools to construct Phylogenetic Trees

Farhana Desai

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On the Construction of a Phylogenetic Tree

Angélica Soto

Zeitschrift für Naturforschung C, 1979

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A Metric for Phylogenetic Trees Based on Matching

Vaibhav Rajan

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2000

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Phylogenetics Algorithms and Applications

Geetika Munjal

Advances in Intelligent Systems and Computing

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The Minimal Spanning Tree Preservation Approaches for DNA Multiple Sequence Alignment and Evolutionary Tree Construction

英德 蔡

Journal of Combinatorial Optimization, 2004

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Similarity Score Estimation and Gaps Trimming of Multiple Sequence Alignment for Phylogenetic Tree Analysis

PICHAYA TANDAYYA

ECTI Transactions on Computer and Information Technology (ECTI-CIT), 2017

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Relative Efficiencies of the Maximum Parsimony and Distance-Matrix Methods in Obtaining the Correct Phylogenetic Tree'

Γιάννης Σούρδης

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A Review on Phylogenetic Analysis: A Journey through Modern Era

Scientific Research Publishing

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Molecular phylogenetics: principles and practice

Ziheng Yang

Nature Reviews Genetics, 2012

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IMPLEMENTATION OF SOME SIMILARITY COEFFICIENTS IN CONJUNCTION WITH MULTIPLE UPGMA AND NEIGHBOR-JOINING ALGORITHMS FOR ENHANCING PHYLOGENETIC TREES

Tarik Rabie

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Alignment-free distance measure based on return time distribution for sequence analysis: Applications to clustering, molecular phylogeny and subtyping

Mohan Kale

Molecular Phylogenetics and Evolution, 2012

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Evolutionary distance estimation and fidelity of pair wise sequence alignment

Michael S Rosenberg

2005

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A Novel Distance Metric for Aligning Multiple Sequences Using DNA Hybridization Process

Michael Arock

International Journal of Intelligent Systems and Applications, 2016

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On the analysis of data derived from mitochondrial DNA distance matrices : Kolmogorov and a traveling salesman give their opinion

Luciana Buriol

2002

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“Head to Tail” Tool Analysis through ClustalW Alignment Algorithms and Construction of Distance Method Neighbor-Joining Trees Based on Genus Fusarium Genomic Distances

Juan Filgueira

Advances in Intelligent Systems and Computing, 2014

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Mathematical Understanding of Sequence Alignment and Phylogenetic Algorithms: A Comprehensive Review of Methods

Rashid Saif

2020

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Implementing UPGMA and NJ Method For Phylogenetic Tree Construction Using Hierarchical Clustering

Harwinder Singh Sohal

2013

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FSA: A Fast Stepwise Addition Algorithm for Constructing Phylogenetic Trees

Abolfazl Ghavidel

International Journal of Bioscience, Biochemistry and Bioinformatics, 2014

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Matching Split Distance for Unrooted Binary Phylogenetic Trees

Damian Bogdanowicz

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2012

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