Folding simulations of a three-dimensional protein model with a nonspecific hydrophobic energy function (original) (raw)

Designability, thermodynamic stability, and dynamics in protein folding: A lattice model study

Chao Tang

The Journal of Chemical Physics, 1999

View PDFchevron_right

Simplified models of protein folding exploiting the Lagrange radius of gyration of the hydrophobic component

Barry Robson

Parallel Computing, 2000

View PDFchevron_right

Stability of preferable structures for a hydrophobic-polar model of protein folding

Hamed Seyed-allaei

Physical Review E, 1998

View PDFchevron_right

A simple lattice model that exhibits a protein-like cooperative all-or-none folding transition

Jeffrey Skolnick

Biopolymers, 2003

View PDFchevron_right

Inverse Protein Folding in 3D Hexagonal Prism Lattice under HP Model

Arash Rafiey

Journal of Computational Biology

View PDFchevron_right

Monte carlo studies on equilibrium globular protein folding. I. Homopolymeric lattice models of ?-barrel proteins

Jeffrey Skolnick

Biopolymers, 1987

View PDFchevron_right

Protein folding: search for basic physical models

Robert Harrison

2003

View PDFchevron_right

Principles of protein folding - A perspective from simple exact models

Ken Dill

Protein Science, 2008

View PDFchevron_right

Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model

Eugene Shakhnovich, Leonid Mirny

Folding & design, 1996

View PDFchevron_right

Entropic formulation for the protein folding process: Hydrophobic stability correlates with folding rates

J P Dal Molin

Physica A: Statistical Mechanics and its Applications, 2018

View PDFchevron_right

Two-State Folding, Folding Through Intermediates, and Metastability In a Minimalistic Hydrophobic-Polar Model for Proteins

Stefan Schnabel

Physical review letters, 2007

View PDFchevron_right

Folding Thermodynamics of a Model Three-Helix-Bundle Protein

Yaoqi Zhou

Proceedings of The National Academy of Sciences, 1997

View PDFchevron_right

Different Kinds of Protein Folding Identified With a Coarse-Grained Heteropolymer Model

Stefan Schnabel

Arxiv preprint arXiv:0902.2652, 2009

View PDFchevron_right

Geometrical model for the native-state folds of proteins

Flavio Seno

Biophysical Chemistry, 2005

View PDFchevron_right

Correlation between rate of folding, energy landscape, and topology in the folding of a model protein HP-36

Arnab Mukherjee

The Journal of Chemical Physics, 2003

View PDFchevron_right

The role of protein homochirality in shaping the energy landscape of folding

Chitra Narayanan

Protein Science, 2007

View PDFchevron_right

Entropy reduction effect imposed by hydrogen bond formation on protein folding cooperativity: Evidence from a hydrophobic minimalist model

Leandro Garcia

Physical Review E, 2005

View PDFchevron_right

THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective

Zaida Luthey-schulten

Annual Review of Physical Chemistry, 1997

View PDFchevron_right

A general method for the prediction of the three dimensional structure and folding pathway of globular proteins: Application to designed helical proteins

Jeffrey Skolnick

The Journal of Chemical Physics, 1993

View PDFchevron_right

Protein Folding: Flexible Lattice Models

Piotr Rotkiewicz

Progress of Theoretical Physics Supplement, 2000

View PDFchevron_right

Atomistic description of the folding of a dimeric protein

Stefano Piana

2013

View PDFchevron_right

Folding Nuclei in 3D Protein Structures

Dmitry Ivankov

Biocomputing 2000, 1999

View PDFchevron_right

Distance-dependent hydrophobic–hydrophobic contacts in protein folding simulations

Angelo Onofrio, Giuseppe Punzi

Physical Chemistry Chemical Physics, 2014

View PDFchevron_right

Inverse Protein Folding in 3D Hexagonal Prism Lattice under HPC Model

Arash Rafiey

Journal of Computational Biology, 2009

View PDFchevron_right

Folding simulations of a three-stranded antiparallel β-sheet peptide

Amedeo Caflisch

Proceedings of the National Academy of Sciences, 2000

View PDFchevron_right

Folding free energy surface of a three-stranded β-sheet protein

Badry Bursulaya

Journal of the American Chemical …, 1999

View PDFchevron_right

Design and folding of dimeric proteins

Guido Tiana

Proteins, 2002

View PDFchevron_right