Probing protein fold space with a simplified model (original) (raw)
Related papers
Geometrical model for the native-state folds of proteins
Biophysical Chemistry, 2005
Identification of native protein folds amongst a large number of incorrect models
Journal of Molecular Biology, 1990
Equilibrium folding pathways for model proteins
Journal of Statistical Physics, 1983
Protein folding and the organization of the protein topology universe
Trends in Biochemical Sciences, 2005
"Protein Engineering, Design and Selection", 1996
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures.
2022
THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective
Annual Review of Physical Chemistry, 1997
Folding free energy surface of a three-stranded β-sheet protein
Journal of the American Chemical …, 1999
Morphogenesis of a protein: folding pathways and the energy landscape1
Biochemical Society …, 2012
2011
Evolution of physics-based methodology for exploring the conformational energy landscape of proteins
Journal of Computational Chemistry, 2002
De novo and inverse folding predictions of protein structure and dynamics
Journal of Computer-Aided Molecular Design, 1993
Folding of Proteins with Diverse Folds
Biophysical Journal, 2006
Exploring folding free energy landscapes using computational protein design
Current Opinion in Structural Biology, 2004
Biopolymers, 2015
Computational methods for the prediction of protein folds
Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, 1997
The role of protein homochirality in shaping the energy landscape of folding
Protein Science, 2007
Native topology or specific interactions: what is more important for protein folding?
Journal of Molecular Biology, 2001
Monte Carlo simulations of the folding of beta-barrel globular proteins
Proceedings of the National Academy of Sciences, 1988
Proteins: Structure, Function, and Genetics, 1998
Reliable Protein Folding on Complex Energy Landscapes: The Free Energy Reaction Path
Biophysical Journal, 2008
Journal of Molecular Biology, 2008
Theoretical and computational studies of protein folding energy landscapes
2005
Designing Misfolded Proteins by Energy Landscaping
The Journal of Physical Chemistry B, 2011
Folding and binding cascades: Shifts in energy landscapes
Proceedings of the National Academy of Sciences, 1999
Analyzing energy landscapes for folding model proteins
The Journal of Chemical Physics, 2006
Conformational subspace in simulation of early‐stage protein folding
Proteins: Structure, Function, and Bioinformatics, 2004
LMProt: An Efficient Algorithm for Monte Carlo Sampling of Protein Conformational Space
Biophysical Journal, 2004
An analysis of incorrectly folded protein models
Journal of Molecular Biology, 1984
On the universe of protein folds
Annual review of biophysics, 2013
High-Resolution Mapping of a Repeat Protein Folding Free Energy Landscape
Biophysical journal, 2016
Cunning simplicity of protein folding landscapes
Protein Engineering, Design and Selection, 2001
Limited conformational space for early-stage protein folding simulation
Bioinformatics, 2004