Genetic and statistical study of HIV integration in the human genome (original) (raw)
Integration of HIV in the Human Genome: Which Sites Are Preferential? A Genetic and Statistical Assessment
Juliana Fonseca Goncalves
International journal of genomics, 2016
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Identification of HIV integration sites in infected host genomic DNA
Angela Ciuffi
Methods, 2011
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Quantifying Heterogeneity in the HIV Genome
Hildete Pinheiro
Computational and Evolutionary Analysis of HIV Molecular Sequences, 2002
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Genomic Sites of Human Immunodeficiency Virus Type 2 (HIV-2) Integration: Similarities to HIV-1 In Vitro and Possible Differences In Vivo
Souleymane Mboup
Journal of Virology, 2006
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A Genomic and Bioinformatics Analysis of the Integration of HIV in Peripheral Blood Mononuclear Cells
Angela Peña
AIDS Research and Human Retroviruses, 2010
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Retroviral Integration Process in the Human Genome: Is It Really Non-Random? A New Statistical Approach
clelia di serio
PLoS Computational Biology, 2008
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Repair of Oxidative DNA Base Damage in the Host Genome Influences the HIV Integration Site Sequence Preference
Kristine Yoder
PLoS ONE, 2014
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Nuclear architecture dictates HIV-1 integration site selection
Hashim Ali
Nature, 2015
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HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
Jeremy Leipzig
Genome Research, 2007
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Evaluating the Impact of Functional Genetic Variation on HIV-1 Control
Kholoud Porter
The Journal of Infectious Diseases, 2017
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Selection of Target Sites for Mobile DNA Integration in the Human Genome
sridhar hannenhalli
PLoS Computational Biology, 2006
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Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription
sridhar hannenhalli
Journal of Virology, 2005
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The substitution rate of HIV-1 subtypes: a genomic approach
Fernando Gonzalez-Candelas
2017
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Structural Basis For HIV-1 DNA Integration in the Human Genome
Rustam Ziganshin
Biophysical Journal, 2009
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Simian Immunodeficiency Virus Integration Preference Is Similar to That of Human Immunodeficiency Virus Type 1
Chin Yuan
Journal of Virology, 2005
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Specific HIV integration sites are linked to clonal expansion and persistence of infected cells
John Coffin
Science, 2014
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Phylodynamics analysis of the Human Immunodeficiency Virus type 1 (HIV-1) envelope gene in mother and child pairs
Luciane Santos
AIDS research and human retroviruses, 2015
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Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration
Maja Kuzman
Nature Communications
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Detecting Selection in the HIV-1 Genome during Sexual Transmission Events
Thomas Klimkait
Viruses, 2022
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Comparative Study of Methods for Detecting Sequence Compartmentalization in Human Immunodeficiency Virus Type 1
Paul Shapshak
Journal of Virology, 2007
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DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity
Marc Ruff
PLOS ONE, 2015
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Association Study of Common Genetic Variants and HIV-1 Acquisition in 6,300 Infected Cases and 7,200 Controls
I. Theodorou
PLoS Pathogens, 2013
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HIV latency and integration site placement in five cell-based models
David Looney
Retrovirology, 2013
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HIV genetic variation is directed and restricted by DNA precursor availability
A. Meyerhans
Journal of Molecular Biology, 1997
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What Integration Sites Tell Us about HIV Persistence
John Coffin
Cell Host & Microbe, 2016
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Human Immunodeficiency Virus Integration Efficiency and Site Selection in Quiescent CD4+ T Cells
Dimitrios Vatakis
Journal of Virology, 2009
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Analysis of HIV-1 intersubtype recombination breakpoints suggests region with high pairing probability may be a more fundamental factor than sequence similarity affecting HIV-1 recombination
lei jia
Virology journal, 2016
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Genomic signal analysis of HIV variability
Dan Otelea
Imaging, Manipulation, and Analysis of Biomolecules and Cells: Fundamentals and Applications III, 2005
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HIV latency. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells
John Coffin
Science (New York, N.Y.), 2014
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Functional Characterization of the Human Immunodeficiency Virus Type 1 Genome by Genetic Footprinting
George Chang
Journal of Virology, 2000
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Estimated Comparative Integration Hotspots Identify Different Behaviors of Retroviral Gene Transfer Vectors
Ingrid Glad
PLoS Computational Biology, 2011
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