Conformational influence of the ribose 2'-hydroxyl group: Crystal structures of DNA-RNA chimeric duplexes (original) (raw)

Solution Structures of DNA Duplexes Containing a DNA·RNA Hybrid Region, d(GG)r(AGAU)d(GAC)·d(GTCATCTCC) and d(GGAGA)r(UGAC)·d(GTCATCTCC) † , ‡

Chojiro Kojima

Biochemistry, 1996

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High-resolution NMR studies of chimeric DNA-RNA-DNA duplexes, heteronomous base pairing, and continuous base stacking at junctions

Shan-ho Chou

Biochemistry, 1991

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The crystal structure of the RNA/DNA hybrid r(GAAGAGAAGC){middle dot}d(GCTTCTCTTC) shows significant differences to that found in solution

Gordon Leonard

Nucleic Acids Research, 1999

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Takanori Ito

Nucleic Acids Research, 2007

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Crystal Structures of Two Plasmid Copy Control Related RNA Duplexes: An 18 Base Pair Duplex at 1.20 Å Resolution and a 19 Base Pair Duplex at 1.55 Å Resolution †

Peter Klosterman

Biochemistry, 1999

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Structure and Dynamics of a DNA.cntdot.RNA Hybrid Duplex with a Chiral Phosphorothioate Moiety: NMR and Molecular Dynamics with Conventional and Time-Averaged Restraints

Mark A Reynolds

Biochemistry, 1995

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Structure of a DNA Duplex That Contains α-Anomeric Nucleotides and 3‘−3‘ and 5‘−5‘ Phosphodiester Linkages: Coexistence of Parallel and Antiparallel DNA

Markus Germann

Biochemistry, 1996

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Crystal and molecular structure of r(CGCGAAUUAGCG): an RNA duplex containing two G(anti)· A(anti) base pairs

Gordon Leonard

Structure, 1994

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Solution Structure of an RNA Duplex Including a C−U Base Pair † , ‡

Masatsune Kainosho

Biochemistry, 2000

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Effects of the Introduction of L-Nucleotides into DNA. Solution Structure of the Heterochiral Duplex d(G-C-G-(L)T-G-C-G).cntdot.d(C-G-C-A-C-G-C) Studied by NMR Spectroscopy

Luisa Tondelli

Biochemistry, 1994

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Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage

Nassim Usman

Chemistry & Biology, 1996

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Structural properties of DNA:RNA duplexes containing 2'-O-methyl and 2'-S-methyl substitutions: a molecular dynamics investigation

dattam venkateswarlu

Nucleic Acids Research, 1999

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The solution structure of a DNA*RNA duplex containing 5-propynyl U and C; comparison with 5-Me modifications

Daquan Gao

Nucleic acids research, 2003

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The DNA strand in DNA.cntdot.RNA hybrid duplexes is neither B-form nor A-form in solution

Miguel Mauricio Arce Salazar

Biochemistry, 1993

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An eight-stranded helical fragment in RNA crystal structure: implications for tetraplex interaction

baocheng pan

Structure (London, England : 1993), 2003

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Crystal structure of an RNA duplex containing phenyl-ribonucleotides, hydrophobic isosteres of the natural pyrimidines

Peter Haeberli

RNA, 2000

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A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC)

M. Vorlickova

Journal of Molecular Biology, 2001

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Structure of a B-form DNA/RNA chimera (dC)(rG)d(ATCG) complexed with daunomycin at 1.5 Å resolution

baocheng pan

Acta Crystallographica Section D-biological Crystallography, 2003

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Conformational Heterogeneity in PNA:PNA Duplexes

Andrea Faccini

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Conformational and Chiral Selection of Oligonucleotides

Helmut Rosemeyer

Chemistry & Biodiversity, 2007

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UV Resonance Raman and Circular Dichroism Studies of a DNA Duplex Containing an A 3 T 3 Tract: Evidence for a Premelting Transition and Three-Centered H-Bonds †

Ishita Mukerji

Biochemistry, 2002

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The hydrogen-bonding structure in parallel-stranded duplex DNA is reverse Watson-Crick

Cees Otto

Biochemistry, 1991

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Crystallographic studies of DNA and RNA

Blaine Mooers

2009

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Crystal structure of an adenine bulge in the RNA chain of a DNA·RNA hybrid, d(CTCCTCTTC)·r(gaagaggag)

C. Sudarsanakumar

Journal of Molecular Biology, 2000

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Sequence-dependent conformational heterogeneity of a hybrid DNA�RNA dodecamer duplex

Andrew Marcus

Journal of Biomolecular NMR, 1994

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Single-Stranded Adenine-Rich DNA and RNA Retain Structural Characteristics of Their Respective Double-Stranded Conformations and Show Directional Differences in Stacking Pattern †

Johan Isaksson

Biochemistry, 2004

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The First Example of a Hoogsteen Basepaired DNA Duplex in Dynamic Equilibrium with a Watson-Crick Basepaired Duplex���A Structural (NMR), Kinetic and Thermodynamic Study

Peter Agback

2001

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Solution structure of a DNA duplex with a chiral alkyl phosphonate moiety

Irene Gómez-pinto, Nico Meeuwenoord

Nucleic Acids Research, 2001

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Duplex DNA Retains the Conformational Features of Single Strands: Perspectives from MD Simulations and Quantum Chemical Computations

Andrea Peluso

International Journal of Molecular Sciences

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Stability and Structure of RNA Duplexes Containing Isoguanosine and Isocytidine

Ryszard Kierzek

Journal of the American Chemical Society, 2001

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Solution structure of DNA:RNA hybrid containing a 2'-deoxy-2'2'-difluorodeoxycytidine (gemcitabine) modification

Ramon Eritja

2021

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DNA, RNA and hybrid RNA–DNA oligomers of identical sequence: structural and dynamic differences

Luciano Cellai

Biophysical Chemistry, 2000

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