Lee, M. S. Y. and Hugall, A. F. 2006. Model type, implicit data weighting, and model averaging in phylogenetics. Molecular Phylogenetics and Evolution 38:848-857.. (original) (raw)
Related papers
Model use in phylogenetics: nine key questions
Trends in Ecology & Evolution, 2007
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
1994
A model for phylogenetic inference using structural and chemical covariates
2001
BMC Evolutionary Biology, 2010
Systematic biology, 2014
MODEL SELECTION IN PHYLOGENETICS
Annual Review of Ecology, Evolution, and Systematics, 2005
Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome
Journal of Biomedical Informatics, 2006
2006
Parsimony, Likelihood, and the Role of Models in Molecular Phylogenetics
Molecular Biology and Evolution, 2000
The impact of sequence parameter values on phylogenetic accuracy
Genome-Wide Heterogeneity of Nucleotide Substitution Model Fit
Genome Biology and Evolution, 2011
Evolution, 1998
Systematic Biology, 2007
Accounting for gene rate heterogeneity in phylogenetic inference
2007
Measuring Fit of Sequence Data to Phylogenetic Model: Gain of Power Using Marginal Tests
Journal of Molecular Evolution, 2009
The Importance of Proper Model Assumption in Bayesian Phylogenetics
Systematic Biology, 2004
Systematic Biology, 2005
Heterogeneity of Nucleotide Frequencies Among Evolutionary Lineages and Phylogenetic Inference
Molecular Biology and Evolution, 2003
Selecting the best-fit model of nucleotide substitution
2001
Conserved Genes, Sampling Error, and Phylogenomic Inference
Multi-model approaches to phylogenetics: Implications for idealization
Studies in History and Philosophy of Science Part A, 2021
Do model-based phylogenetic analyses perform better than parsimony? A test with empirical data
Cladistics, 2011
Using Structural Information in Modeling and Multiple Alignments for Phylogenetics
PLoS One, 2011
Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs
BMC Evolutionary Biology, 2008
Systematic Biology, 2006
The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated
Systematic Biology, 2004
Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo
Philosophical Transactions of the Royal Society B: Biological Sciences, 2008
Bayesian Phylogenetic Model Selection Using Reversible Jump Markov Chain Monte Carlo
Molecular Biology and Evolution, 2004
Implementing and testing the multispecies coalescent model: a valuable paradigm for phylogenomics
Molecular Phylogenetics and Evolution, 2015
Molecular Biology and Evolution, 2001