GEOexplorer (original) (raw)
This is the released version of GEOexplorer; for the devel version, seeGEOexplorer.
GEOexplorer: a webserver for gene expression analysis and visualisation
Bioconductor version: Release (3.20)
GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).
Author: Guy Hunt [aut, cre] , Rafael Henkin [ctb, ths] , Alfredo Iacoangeli [ctb, ths] , Fabrizio Smeraldi [ctb, ths] , Michael Barnes [ctb, ths]
Maintainer: Guy Hunt <guy.hunt at kcl.ac.uk>
Citation (from within R, enter citation("GEOexplorer")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GEOexplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GEOexplorer")
Details
biocViews | DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, RNASeq, Software, Transcriptomics, mRNAMicroarray |
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Version | 1.12.0 |
In Bioconductor since | BioC 3.14 (R-4.1) (3 years) |
License | GPL-3 |
Depends | shiny, limma, Biobase, plotly, enrichR, R (>= 4.1.0) |
Imports | DT, XML, httr, sva, xfun, edgeR, htmltools, factoextra, heatmaply, pheatmap, scales, shinyHeatmaply, shinybusy, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, markdown, knitr, utils, xml2, R.utils, readxl, shinycssloaders, car |
System Requirements | |
URL | https://github.com/guypwhunt/GEOexplorer/ |
Bug Reports | https://github.com/guypwhunt/GEOexplorer/issues |
See More
Suggests | rmarkdown, usethis, testthat (>= 3.0.0) |
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Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GEOexplorer_1.12.0.tar.gz |
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Windows Binary (x86_64) | GEOexplorer_1.12.0.zip |
macOS Binary (x86_64) | GEOexplorer_1.12.0.tgz |
macOS Binary (arm64) | GEOexplorer_1.11.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GEOexplorer |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GEOexplorer |
Bioc Package Browser | https://code.bioconductor.org/browse/GEOexplorer/ |
Package Short Url | https://bioconductor.org/packages/GEOexplorer/ |
Package Downloads Report | Download Stats |