umap: Uniform Manifold Approximation and Projection (original) (raw)
Uniform manifold approximation and projection is a technique for dimension reduction. The algorithm was described by McInnes and Healy (2018) in <doi:10.48550/arXiv.1802.03426>. This package provides an interface for two implementations. One is written from scratch, including components for nearest-neighbor search and for embedding. The second implementation is a wrapper for 'python' package 'umap-learn' (requires separate installation, see vignette for more details).
| Version: | 0.2.10.0 |
|---|---|
| Depends: | R (≥ 3.6.0) |
| Imports: | Matrix, methods, openssl, reticulate, Rcpp (≥ 0.12.6), RSpectra, stats |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2023-02-01 |
| DOI: | 10.32614/CRAN.package.umap |
| Author: | Tomasz Konopka [aut, cre] |
| Maintainer: | Tomasz Konopka |
| BugReports: | https://github.com/tkonopka/umap/issues |
| License: | MIT + file |
| URL: | https://github.com/tkonopka/umap |
| NeedsCompilation: | yes |
| CRAN checks: | umap results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: | KODAMA |
|---|---|
| Reverse imports: | animalcules, BatchQC, CelliD, chameleon, ChromSCape, COTAN, EmbedSOM, emcAdr, FateID, GEOexplorer, ggpca, ggsem, HIPPO, HVT, ILoReg, InterCellar, jrSiCKLSNMF, karyotapR, M3C, MatrixQCvis, Mercator, musclesyneRgies, nevada, PhyloProfile, PIUMA, projectR, RaceID, RCSL, regioneReloaded, rrvgo, RSDA, SaturnCoefficient, scDataviz, scDesign3, sRACIPE, SuperCell, tall, theftdlc, tomoda |
| Reverse suggests: | cola, crosshap, dimRed, HDCytoData, MiscMetabar, NGCHM, OlinkAnalyze, OTclust, pctax, Platypus, ProjectionBasedClustering, pRoloc, qeML, quollr, scPipe, seriation, SPIAT, UCSCXenaShiny |
Linking:
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