HIPPO (original) (raw)

This is the released version of HIPPO; for the devel version, seeHIPPO.

Heterogeneity-Induced Pre-Processing tOol

Bioconductor version: Release (3.21)

For scRNA-seq data, it selects features and clusters the cells simultaneously for single-cell UMI data. It has a novel feature selection method using the zero inflation instead of gene variance, and computationally faster than other existing methods since it only relies on PCA+Kmeans rather than graph-clustering or consensus clustering.

Author: Tae Kim [aut, cre], Mengjie Chen [aut]

Maintainer: Tae Kim

Citation (from within R, enter citation("HIPPO")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HIPPO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HIPPO")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.