LymphoSeq (original) (raw)

This is the released version of LymphoSeq; for the devel version, seeLymphoSeq.

Analyze high-throughput sequencing of T and B cell receptors

Bioconductor version: Release (3.21)

This R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay. Its input comes from tab-separated value (.tsv) files exported from the ImmunoSEQ analyzer.

Author: David Coffey

Maintainer: David Coffey

Citation (from within R, enter citation("LymphoSeq")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LymphoSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LymphoSeq")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.