compcodeR (original) (raw)

This is the released version of compcodeR; for the devel version, seecompcodeR.

RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods

Bioconductor version: Release (3.20)

This package provides extensive functionality for comparing results obtained by different methods for differential expression analysis of RNAseq data. It also contains functions for simulating count data. Finally, it provides convenient interfaces to several packages for performing the differential expression analysis. These can also be used as templates for setting up and running a user-defined differential analysis workflow within the framework of the package.

Author: Charlotte Soneson [aut, cre] , Paul Bastide [aut] , Mélina Gallopin [aut]

Maintainer: Charlotte Soneson

Citation (from within R, enter citation("compcodeR")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("compcodeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("compcodeR")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.