Asgard archaea illuminate the origin of eukaryotic cellular complexity (Journal Article) (original) (raw)

OSTI.GOV Journal Article: Asgard archaea illuminate the origin of eukaryotic cellular complexity

Journal Article · 11 Jan 2017 · Nature (London)

[Caceres, Eva F. [1]](/search/author:"Caceres, Eva F."); [Saw, Jimmy H. [1]](/search/author:"Saw, Jimmy H."); [Bäckström, Disa [1]](/search/author:"Bäckström, Disa"); [Juzokaite, Lina [1]](/search/author:"Juzokaite, Lina"); [Vancaester, Emmelien [2]](/search/author:"Vancaester, Emmelien"); [Seitz, Kiley W. [3]](/search/author:"Seitz, Kiley W."); [Anantharaman, Karthik [4]](/search/author:"Anantharaman, Karthik"); [Starnawski, Piotr [5]](/search/author:"Starnawski, Piotr"); [Kjeldsen, Kasper U. [5]](/search/author:"Kjeldsen, Kasper U."); [Stott, Matthew B. [6]](/search/author:"Stott, Matthew B."); [Nunoura, Takuro [7]](/search/author:"Nunoura, Takuro"); [Banfield, Jillian F. [4]](/search/author:"Banfield, Jillian F."); [Schramm, Andreas [5]](/search/author:"Schramm, Andreas"); [Baker, Brett J. [3]](/search/author:"Baker, Brett J."); [Spang, Anja [1]](/search/author:"Spang, Anja"); [Ettema, Thijs J. G. [1]](/search/author:"Ettema, Thijs J. G.")

  1. Uppsala Univ. (Sweden). Dept. of Cell and Molecular Biology, Science for Life Lab.
  2. Uppsala Univ. (Sweden). Dept. of Cell and Molecular Biology, Science for Life Lab.; Ghent Univ. (Belgium). Dept. of Plant Systems Biology, VIB and Dept. of Plant Biotechnology and Bioinformatics
  3. Univ. of Texas-Austin, Port Aransas, TX (United States). Dept. of Marine Science, Marine Science Inst.
  4. Univ. of California, Berkeley, CA (United States). Dept. of Earth and Planetary Sciences and Dept. of Environmental Science, Policy, and Management
  5. Aarhus Univ. (Denmark). Dept. of Bioscience, Section for Microbiology and Center for Geomicrobiology
  6. GNS Science, Taupō (New Zealand). Extremophile Research Group
  7. Japan Agency for Marine-Earth Science and Technology, Yokosuka (Japan). Research and Development Center for Marine Biosciences

The origin and cellular complexity of eukaryotes represent a major enigma in biology. Current data support scenarios in which an archaeal host cell and an alphaproteobacterial (mitochondrial) endosymbiont merged together, resulting in the first eukaryotic cell. The host cell is related to Lokiarchaeota, an archaeal phylum with many eukaryotic features. The emergence of the structural complexity that characterizes eukaryotic cells remains unclear. In this report we describe the 'Asgard' superphylum, a group of uncultivated archaea that, as well as Lokiarchaeota, includes Thor-, Odin- and Heimdallarchaeota. Asgard archaea affiliate with eukaryotes in phylogenomic analyses, and their genomes are enriched for proteins formerly considered specific to eukaryotes. Interestingly, thorarchaeal genomes encode several homologues of eukaryotic membrane-trafficking machinery components, including Sec23/24 and TRAPP domains. Furthermore, we identify thorarchaeal proteins with similar features to eukaryotic coat proteins involved in vesicle biogenesis. Our results expand the known repertoire of 'eukaryote-specific' proteins in Archaea, suggesting that the archaeal host cell already contained many key components that govern eukaryotic cellular complexity.

Research Organization:

Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:

USDOE Office of Science (SC)

Grant/Contract Number:

AC02-05CH11231

OSTI ID:

1580084

Journal Information:

Nature (London), Vol. 541, Issue 7637; ISSN 0028-0836

Publisher:

Nature Publishing GroupCopyright Statement

Country of Publication:

United States

Language:

English

Citation information provided by Web of Science

References (98)

The Phyre2 web portal for protein modeling, prediction and analysis Kelley, Lawrence A.; Mezulis, Stefans; Yates, Christopher M. Nature Protocols, Vol. 10, Issue 6 https://doi.org/10.1038/nprot.2015.053 journal May 2015
Energy for two: New archaeal lineages and the origin of mitochondria Martin, William F.; Neukirchen, Sinje; Zimorski, Verena BioEssays, Vol. 38, Issue 9 https://doi.org/10.1002/bies.201600089 journal June 2016
Phylogenomics of prokaryotic ribosomal proteins Yutin, Natalya; Makarova, Kira S.; Wolf, Yuri I. Genome Biology, Vol. 12, Issue Suppl 1 https://doi.org/10.1186/gb-2011-12-s1-p30 journal January 2011
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119 journal March 2010
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 Guindon, Stéphane; Dufayard, Jean-François; Lefort, Vincent Oxford University Press https://doi.org/10.5167/uzh-155669 text January 2010
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments Criscuolo, Alexis; Gribaldo, Simonetta BMC Evolutionary Biology, Vol. 10, Issue 1 https://doi.org/10.1186/1471-2148-10-210 journal January 2010
The archaebacterial origin of eukaryotes Cox, C. J.; Foster, P. G.; Hirt, R. P. Proceedings of the National Academy of Sciences, Vol. 105, Issue 51 https://doi.org/10.1073/pnas.0810647105 journal December 2008
Mitochondrial Evolution Gray, M. W. Science, Vol. 283, Issue 5407 https://doi.org/10.1126/science.283.5407.1476 journal March 1999
UCSF Chimera?A visualization system for exploratory research and analysis Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C. Journal of Computational Chemistry, Vol. 25, Issue 13 https://doi.org/10.1002/jcc.20084 journal January 2004
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability Katoh, K.; Standley, D. M. Molecular Biology and Evolution, Vol. 30, Issue 4 https://doi.org/10.1093/molbev/mst010 journal January 2013
Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling Castelle, Cindy J.; Wrighton, Kelly C.; Thomas, Brian C. Current Biology, Vol. 25, Issue 6 https://doi.org/10.1016/j.cub.2015.01.014 journal March 2015
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry Journal of Computational Biology, Vol. 19, Issue 5 https://doi.org/10.1089/cmb.2012.0021 journal May 2012
The Archaeal Legacy of Eukaryotes: A Phylogenomic Perspective Guy, L.; Saw, J. H.; Ettema, T. J. G. Cold Spring Harbor Perspectives in Biology, Vol. 6, Issue 10 https://doi.org/10.1101/cshperspect.a016022 journal July 2014
COPII: A membrane coat formed by Sec proteins that drive vesicle budding from the endoplasmic reticulum Barlowe, C. Cell, Vol. 77, Issue 6 https://doi.org/10.1016/0092-8674(94)90138-4 journal June 1994
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Albertsen, Mads; Hugenholtz, Philip; Skarshewski, Adam Nature Biotechnology, Vol. 31, Issue 6 https://doi.org/10.1038/nbt.2579 journal May 2013
Ultrafast Approximation for Phylogenetic Bootstrap Minh, B. Q.; Nguyen, M. A. T.; von Haeseler, A. Molecular Biology and Evolution, Vol. 30, Issue 5 https://doi.org/10.1093/molbev/mst024 journal February 2013
Phylogenomics of Prokaryotic Ribosomal Proteins Yutin, Natalya; Puigbò, Pere; Koonin, Eugene V. PLoS ONE, Vol. 7, Issue 5 https://doi.org/10.1371/journal.pone.0036972 journal May 2012
Bi-Directional Protein Transport Between the er and Golgi Lee, Marcus C. S.; Miller, Elizabeth A.; Goldberg, Jonathan Annual Review of Cell and Developmental Biology, Vol. 20, Issue 1 https://doi.org/10.1146/annurev.cellbio.20.010403.105307 journal November 2004
Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry Pittis, Alexandros A.; Gabaldón, Toni Nature, Vol. 531, Issue 7592 https://doi.org/10.1038/nature16941 journal February 2016
A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types Lever, Mark A.; Torti, Andrea; Eickenbusch, Philip Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.00476 journal May 2015
Lokiarchaeon is hydrogen dependent Sousa, Filipa L.; Neukirchen, Sinje; Allen, John F. Nature Microbiology, Vol. 1, Issue 5 https://doi.org/10.1038/nmicrobiol.2016.34 journal April 2016
Eukaryotic Origins: How and When Was the Mitochondrion Acquired? Poole, A. M.; Gribaldo, S. Cold Spring Harbor Perspectives in Biology, Vol. 6, Issue 12 https://doi.org/10.1101/cshperspect.a015990 journal July 2014
Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales Makarova, Kira; Wolf, Yuri; Koonin, Eugene Life, Vol. 5, Issue 1 https://doi.org/10.3390/life5010818 journal March 2015
Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery Makarova, Kira S.; Krupovic, Mart; Koonin, Eugene V. Frontiers in Microbiology, Vol. 5 https://doi.org/10.3389/fmicb.2014.00354 journal July 2014
Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the ‘lipid divide’ Villanueva, Laura; Schouten, Stefan; Damsté, Jaap S. Sinninghe Environmental Microbiology, Vol. 19, Issue 1 https://doi.org/10.1111/1462-2920.13361 journal July 2016
Prokaryote Complex Intracellular Structures: Descriptions and Discoveries Shively, Jessup M. Complex Intracellular Structures in Prokaryotes. Microbiology Monographs https://doi.org/10.1007/7171_018 book January 2006
Archaeal origin of tubulin Yutin, Natalya; Koonin, Eugene V. Biology Direct, Vol. 7, Issue 1 https://doi.org/10.1186/1745-6150-7-10 journal January 2012
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence Lowe, Todd M.; Eddy, Sean R. Nucleic Acids Research, Vol. 25, Issue 5 https://doi.org/10.1093/nar/25.5.955 journal March 1997
Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea Baker, Brett J.; Saw, Jimmy H.; Lind, Anders E. Nature Microbiology, Vol. 1, Issue 3 https://doi.org/10.1038/nmicrobiol.2016.2 journal February 2016
An archaeal origin of eukaryotes supports only two primary domains of life Williams, Tom A.; Foster, Peter G.; Cox, Cymon J. Nature, Vol. 504, Issue 7479 https://doi.org/10.1038/nature12779 journal December 2013
Endosymbiosis and Eukaryotic Cell Evolution Archibald, John M. Current Biology, Vol. 25, Issue 19 https://doi.org/10.1016/j.cub.2015.07.055 journal October 2015
The Dispersed Archaeal Eukaryome and the Complex Archaeal Ancestor of Eukaryotes Koonin, E. V.; Yutin, N. Cold Spring Harbor Perspectives in Biology, Vol. 6, Issue 4 https://doi.org/10.1101/cshperspect.a016188 journal April 2014
Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade Viklund, J.; Ettema, T. J. G.; Andersson, S. G. E. Molecular Biology and Evolution, Vol. 29, Issue 2 https://doi.org/10.1093/molbev/msr203 journal September 2011
Energized outer membrane and spatial separation of metabolic processes in the hyperthermophilic Archaeon Ignicoccus hospitalis Kuper, U.; Meyer, C.; Muller, V. Proceedings of the National Academy of Sciences, Vol. 107, Issue 7 https://doi.org/10.1073/pnas.0911711107 journal February 2010
Endosymbiotic origin and differential loss of eukaryotic genes Ku, Chuan; Nelson-Sathi, Shijulal; Roettger, Mayo Nature, Vol. 524, Issue 7566 https://doi.org/10.1038/nature14963 journal August 2015
The hybrid nature of the Eukaryota and a consilient view of life on Earth McInerney, James O.; O'Connell, Mary J.; Pisani, Davide Nature Reviews Microbiology, Vol. 12, Issue 6 https://doi.org/10.1038/nrmicro3271 journal May 2014
Archaeal ancestors of eukaryotes: not so elusive any more Koonin, Eugene V. BMC Biology, Vol. 13, Issue 1 https://doi.org/10.1186/s12915-015-0194-5 journal October 2015
SMART: recent updates, new developments and status in 2015 Letunic, Ivica; Doerks, Tobias; Bork, Peer Nucleic Acids Research, Vol. 43, Issue D1 https://doi.org/10.1093/nar/gku949 journal October 2014
Energized outer membrane and spatial separation of metabolic processes in the hyperthermophilic Archaeon "Ignicoccus hospitalis" Küper, Ulf; Meyer, Carolin; Müller, Volker Universität Regensburg https://doi.org/10.5283/epub.21394 text January 2010
On the Archaeal Origins of Eukaryotes and the Challenges of Inferring Phenotype from Genotype Dey, Gautam; Thattai, Mukund; Baum, Buzz Trends in Cell Biology, Vol. 26, Issue 7 https://doi.org/10.1016/j.tcb.2016.03.009 journal July 2016
A congruent phylogenomic signal places eukaryotes within the Archaea Williams, Tom A.; Foster, Peter G.; Nye, Tom M. W. Proceedings of the Royal Society B: Biological Sciences, Vol. 279, Issue 1749 https://doi.org/10.1098/rspb.2012.1795 journal October 2012
The TRAPP Complex: Insights into its Architecture and Function Sacher, Michael; Kim, Yeon-Gil; Lavie, Arnon Traffic, Vol. 9, Issue 12 https://doi.org/10.1111/j.1600-0854.2008.00833.x journal December 2008
Phylogenomics and the reconstruction of the tree of life Delsuc, Frédéric; Brinkmann, Henner; Philippe, Hervé Nature Reviews Genetics, Vol. 6, Issue 5 https://doi.org/10.1038/nrg1603 journal May 2005
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 Guindon, Stéphane; Dufayard, Jean-François; Lefort, Vincent Systematic Biology, Vol. 59, Issue 3 https://doi.org/10.1093/sysbio/syq010 journal March 2010
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction Seitz, Kiley W.; Lazar, Cassandre S.; Hinrichs, Kai-Uwe The ISME Journal, Vol. 10, Issue 7 https://doi.org/10.1038/ismej.2015.233 journal January 2016
Trimmomatic: a flexible trimmer for Illumina sequence data Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern Bioinformatics, Vol. 30, Issue 15 https://doi.org/10.1093/bioinformatics/btu170 journal April 2014
Community-wide analysis of microbial genome sequence signatures Dick, Gregory J.; Andersson, Anders F.; Baker, Brett J. Genome Biology, Vol. 10, Issue 8 https://doi.org/10.1186/gb-2009-10-8-r85 journal January 2009
The archaeal ‘TACK’ superphylum and the origin of eukaryotes Guy, Lionel; Ettema, Thijs J. G. Trends in Microbiology, Vol. 19, Issue 12 https://doi.org/10.1016/j.tim.2011.09.002 journal December 2011
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence Lowe, Todd M.; Eddy, Sean R. Nucleic Acids Research, Vol. 25, Issue 5 https://doi.org/10.1093/nar/25.5.0955 journal March 1997
Culture-Dependent and -Independent Characterization of Microbial Communities Associated with a Shallow Submarine Hydrothermal System Occurring within a Coral Reef off Taketomi Island, Japan Hirayama, H.; Sunamura, M.; Takai, K. Applied and Environmental Microbiology, Vol. 73, Issue 23 https://doi.org/10.1128/AEM.01258-07 journal October 2007
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T. Genome Research, Vol. 25, Issue 7 https://doi.org/10.1101/gr.186072.114 journal May 2015
Ray Meta: scalable de novo metagenome assembly and profiling Boisvert, Sébastien; Raymond, Frédéric; Godzaridis, Élénie Genome Biology, Vol. 13, Issue 12 https://doi.org/10.1186/gb-2012-13-12-r122 journal January 2012
The energetics of genome complexity Lane, Nick; Martin, William Nature, Vol. 467, Issue 7318 https://doi.org/10.1038/nature09486 journal October 2010
The HHpred interactive server for protein homology detection and structure prediction Soding, J.; Biegert, A.; Lupas, A. N. Nucleic Acids Research, Vol. 33, Issue Web Server https://doi.org/10.1093/nar/gki408 journal July 2005
Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems Mariotti, Marco; Lobanov, Alexei V.; Manta, Bruno Molecular Biology and Evolution, Vol. 33, Issue 9 https://doi.org/10.1093/molbev/msw122 journal July 2016
InterProScan 5: genome-scale protein function classification Jones, P.; Binns, D.; Chang, H. -Y. Bioinformatics, Vol. 30, Issue 9 https://doi.org/10.1093/bioinformatics/btu031 journal January 2014
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Stamatakis, Alexandros Bioinformatics, Vol. 30, Issue 9 https://doi.org/10.1093/bioinformatics/btu033 journal January 2014
Functional and Genomic Analyses of Alpha-Solenoid Proteins Fournier, David; Palidwor, Gareth A.; Shcherbinin, Sergey PLoS ONE, Vol. 8, Issue 11 https://doi.org/10.1371/journal.pone.0079894 journal November 2013
The Pfam protein families database: towards a more sustainable future Finn, Robert D.; Coggill, Penelope; Eberhardt, Ruth Y. Nucleic Acids Research, Vol. 44, Issue D1 https://doi.org/10.1093/nar/gkv1344 journal December 2015
Unusual biology across a group comprising more than 15% of domain Bacteria Brown, Christopher T.; Hug, Laura A.; Thomas, Brian C. Nature, Vol. 523, Issue 7559 https://doi.org/10.1038/nature14486 journal June 2015
Binning metagenomic contigs by coverage and composition Alneberg, Johannes; Bjarnason, Brynjar Smári; de Bruijn, Ino Nature Methods, Vol. 11, Issue 11 https://doi.org/10.1038/nmeth.3103 journal September 2014
A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types Lever, Mark A.; Torti, Andrea; Eickenbusch, Philip ETH Zurich https://doi.org/10.3929/ethz-b-000102119 text January 2015
Components of Coated Vesicles and Nuclear Pore Complexes Share a Common Molecular Architecture Devos, Damien; Dokudovskaya, Svetlana; Alber, Frank PLoS Biology, Vol. 2, Issue 12 https://doi.org/10.1371/journal.pbio.0020380 journal November 2004
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins Raiborg, Camilla; Stenmark, Harald Nature, Vol. 458, Issue 7237 https://doi.org/10.1038/nature07961 journal March 2009
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process Lartillot, Nicolas; Philippe, Hervé Molecular Biology and Evolution, Vol. 21, Issue 6 https://doi.org/10.1093/molbev/msh112 journal June 2004
The prokaryotic V4R domain is the likely ancestor of a key component of the eukaryotic vesicle transport system Podar, Mircea; Wall, Mark A.; Makarova, Kira S. Biology Direct, Vol. 3, Issue 1 https://doi.org/10.1186/1745-6150-3-2 journal January 2008
Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol ε and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors Tahirov, Tahir H.; Makarova, Kira S.; Rogozin, Igor B. Biology Direct, Vol. 4, Issue 1 https://doi.org/10.1186/1745-6150-4-11 journal January 2009
Evolution of the eukaryotic membrane-trafficking system: origin, tempo and mode Dacks, J. B.; Field, M. C. Journal of Cell Science, Vol. 120, Issue 17 https://doi.org/10.1242/jcs.013250 journal August 2007
Endosymbiotic theories for eukaryote origin Martin, William F.; Garg, Sriram; Zimorski, Verena Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 370, Issue 1678 https://doi.org/10.1098/rstb.2014.0330 journal September 2015
Mitochondria in the second act Ettema, Thijs J. G. Nature, Vol. 531, Issue 7592 https://doi.org/10.1038/nature16876 journal February 2016
Origin of eukaryotes from within archaea, archaeal eukaryome and bursts of gene gain: eukaryogenesis just made easier? Koonin, Eugene V. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 370, Issue 1678 https://doi.org/10.1098/rstb.2014.0333 journal September 2015
On a bender—BARs, ESCRTs, COPs, and finally getting your coat Field, Mark C.; Sali, Andrej; Rout, Michael P. The Journal of Cell Biology, Vol. 193, Issue 6 https://doi.org/10.1083/jcb.201102042 journal June 2011
Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks Klinger, Christen M.; Spang, Anja; Dacks, Joel B. Molecular Biology and Evolution, Vol. 33, Issue 6 https://doi.org/10.1093/molbev/msw034 journal February 2016
Eukaryotic evolution, changes and challenges Embley, T. Martin; Martin, William Nature, Vol. 440, Issue 7084 https://doi.org/10.1038/nature04546 journal March 2006
IMG: the integrated microbial genomes database and comparative analysis system Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K. Nucleic Acids Research, Vol. 40, Issue D1 https://doi.org/10.1093/nar/gkr1044 journal December 2011
Characterization and functional analysis of phytoene synthase gene family in tobacco Wang, Zhaojun; Zhang, Lin; Dong, Chen BMC Plant Biology, Vol. 21, Issue 1 https://doi.org/10.1186/s12870-020-02816-3 journal January 2021
From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell Martijn, Joran; Ettema, Thijs J. G. Biochemical Society Transactions, Vol. 41, Issue 1 https://doi.org/10.1042/BST20120292 journal January 2013
Unexpected Ancient Paralogs and an Evolutionary Model for the COPII Coat Complex Schlacht, Alexander; Dacks, Joel B. Genome Biology and Evolution, Vol. 7, Issue 4 https://doi.org/10.1093/gbe/evv045 journal March 2015
DendroPy: a Python library for phylogenetic computing Sukumaran, J.; Holder, M. T. Bioinformatics, Vol. 26, Issue 12 https://doi.org/10.1093/bioinformatics/btq228 journal April 2010
On Reduced Amino Acid Alphabets for Phylogenetic Inference Susko, E.; Roger, A. J. Molecular Biology and Evolution, Vol. 24, Issue 9 https://doi.org/10.1093/molbev/msm144 journal May 2007
Bacterial Vesicle Secretion and the Evolutionary Origin of the Eukaryotic Endomembrane System Gould, Sven B.; Garg, Sriram G.; Martin, William F. Trends in Microbiology, Vol. 24, Issue 7 https://doi.org/10.1016/j.tim.2016.03.005 journal July 2016
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies Nguyen, Lam-Tung; Schmidt, Heiko A.; von Haeseler, Arndt Molecular Biology and Evolution, Vol. 32, Issue 1 https://doi.org/10.1093/molbev/msu300 journal November 2014
S-layer and cytoplasmic membrane – exceptions from the typical archaeal cell wall with a focus on double membranes Klingl, Andreas Frontiers in Microbiology, Vol. 5 https://doi.org/10.3389/fmicb.2014.00624 journal November 2014
Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models Brady, Arthur; Salzberg, Steven L. Nature Methods, Vol. 6, Issue 9 https://doi.org/10.1038/nmeth.1358 journal August 2009
CDD: NCBI's conserved domain database Marchler-Bauer, Aron; Derbyshire, Myra K.; Gonzales, Noreen R. Nucleic Acids Research, Vol. 43, Issue D1 https://doi.org/10.1093/nar/gku1221 journal November 2014
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth Peng, Y.; Leung, H. C. M.; Yiu, S. M. Bioinformatics, Vol. 28, Issue 11 https://doi.org/10.1093/bioinformatics/bts174 journal April 2012
PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment Lartillot, Nicolas; Rodrigue, Nicolas; Stubbs, Daniel Systematic Biology, Vol. 62, Issue 4 https://doi.org/10.1093/sysbio/syt022 journal April 2013
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction Kai-Uwe, Hinrichs,; W., Seitz, Kiley; S., Lazar, Cassandre The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/ymjj-1c73 text January 2016
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses Capella-Gutierrez, S.; Silla-Martinez, J. M.; Gabaldon, T. Bioinformatics, Vol. 25, Issue 15 https://doi.org/10.1093/bioinformatics/btp348 journal June 2009
Are There Rab GTPases in Archaea? Surkont, Jaroslaw; Pereira-Leal, Jose B. Molecular Biology and Evolution, Vol. 33, Issue 7 https://doi.org/10.1093/molbev/msw061 journal March 2016
The origin of the eukaryotic cell: A genomic investigation Hartman, H.; Fedorov, A. Proceedings of the National Academy of Sciences, Vol. 99, Issue 3 https://doi.org/10.1073/pnas.032658599 journal January 2002
Complex archaea that bridge the gap between prokaryotes and eukaryotes Spang, Anja; Saw, Jimmy H.; Jørgensen, Steffen L. Nature, Vol. 521, Issue 7551 https://doi.org/10.1038/nature14447 journal May 2015
Open Questions on the Origin of Eukaryotes López-García, Purificación; Moreira, David Trends in Ecology & Evolution, Vol. 30, Issue 11 https://doi.org/10.1016/j.tree.2015.09.005 journal November 2015
The two-domain tree of life is linked to a new root for the Archaea Raymann, Kasie; Brochier-Armanet, Céline; Gribaldo, Simonetta Proceedings of the National Academy of Sciences, Vol. 112, Issue 21 https://doi.org/10.1073/pnas.1420858112 journal May 2015
The origins of phagocytosis and eukaryogenesis Yutin, Natalya; Wolf, Maxim Y.; Wolf, Yuri I. Biology Direct, Vol. 4, Issue 1 https://doi.org/10.1186/1745-6150-4-9 journal January 2009
Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes Saw, Jimmy H.; Spang, Anja; Zaremba-Niedzwiedzka, Katarzyna Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 370, Issue 1678 https://doi.org/10.1098/rstb.2014.0328 journal September 2015
Genetic Diversity of Archaea in Deep-Sea Hydrothermal Vent Environments Takai, Ken; Horikoshi, Koki Genetics, Vol. 152, Issue 4 https://doi.org/10.1093/genetics/152.4.1285 journal August 1999
Data from: Asgard archaea illuminate the origin of eukaryotic cellular complexity Zaremba-Niedzwiedzka, Katarzyna; Caceres, Eva F.; Saw, Jimmy H. Dryad https://doi.org/10.5061/dryad.c471f dataset January 2018

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Mosaic origin of the eukaryotic kinetochore Tromer, Eelco C.; van Hooff, Jolien J. E.; Kops, Geert J. P. L. Proceedings of the National Academy of Sciences, Vol. 116, Issue 26 https://doi.org/10.1073/pnas.1821945116 journal May 2019
Mixing of meteoric and geothermal fluids supports hyperdiverse chemosynthetic hydrothermal communities Colman, Daniel R.; Lindsay, Melody R.; Boyd, Eric S. Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-08499-1 journal February 2019
Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere Carr, Stephanie A.; Jungbluth, Sean P.; Eloe-Fadrosh, Emiley A. The ISME Journal, Vol. 13, Issue 6 https://doi.org/10.1038/s41396-019-0352-9 journal February 2019
PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees Fang, Yang; Liu, Chengcheng; Lin, Jiangyi BMC Evolutionary Biology, Vol. 19, Issue 1 https://doi.org/10.1186/s12862-019-1541-x journal December 2019
Insights into RNA-processing pathways and associated RNA-degrading enzymes in Archaea Clouet-d'Orval, Béatrice; Batista, Manon; Bouvier, Marie FEMS Microbiology Reviews, Vol. 42, Issue 5 https://doi.org/10.1093/femsre/fuy016 journal April 2018
Division plane placement in pleomorphic archaea is dynamically coupled to cell shape Walsh, James C.; Angstmann, Christopher N.; Bisson‐Filho, Alexandre W. Molecular Microbiology, Vol. 112, Issue 3 https://doi.org/10.1111/mmi.14316 journal June 2019
The essential genome of the crenarchaeal model Sulfolobus islandicus Zhang, Changyi; Phillips, Alex P. R.; Wipfler, Rebecca L. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-07379-4 journal November 2018
Life on the fringe: microbial adaptation to growth on carbon monoxide Robb, Frank T.; Techtmann, Stephen M. F1000Research, Vol. 7 https://doi.org/10.12688/f1000research.16059.1 journal January 2018
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes Alneberg, Johannes; Karlsson, Christofer M. G.; Divne, Anna-Maria https://doi.org/10.1101/219295 posted_content November 2017
Archaea and the origin of eukaryotes Eme, Laura; Spang, Anja; Lombard, Jonathan Nature Reviews Microbiology, Vol. 15, Issue 12 https://doi.org/10.1038/nrmicro.2017.133 journal November 2017
Functional horizontal gene transfer from bacteria to eukaryotes Husnik, Filip; McCutcheon, John P. Nature Reviews Microbiology, Vol. 16, Issue 2 https://doi.org/10.1038/nrmicro.2017.137 journal November 2017
Keeping the home fires burning: AMP-activated protein kinase Hardie, D. Grahame Journal of The Royal Society Interface, Vol. 15, Issue 138 https://doi.org/10.1098/rsif.2017.0774 journal January 2018
Asgard archaea capable of anaerobic hydrocarbon cycling Seitz, Kiley W.; Dombrowski, Nina; Eme, Laura Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-09364-x journal April 2019
Cryptic CH4 cycling in the sulfate–methane transition of marine sediments apparently mediated by ANME-1 archaea Beulig, F.; Røy, H.; McGlynn, S. E. The ISME Journal, Vol. 13, Issue 2 https://doi.org/10.1038/s41396-018-0273-z journal September 2018
Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments Orsi, William D.; Vuillemin, Aurèle; Rodriguez, Paula Nature Microbiology, Vol. 5, Issue 2 https://doi.org/10.1038/s41564-019-0630-3 journal December 2019
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors Maus, Irena; Rumming, Madis; Bergmann, Ingo Biotechnology for Biofuels, Vol. 11, Issue 1 https://doi.org/10.1186/s13068-018-1162-4 journal June 2018
Confident phylogenetic identification of uncultured prokaryotes through long read amplicon sequencing of the 16S‐ITS‐23S rRNA operon Martijn, Joran; Lind, Anders E.; Schön, Max E. Environmental Microbiology, Vol. 21, Issue 7 https://doi.org/10.1111/1462-2920.14636 journal May 2019
Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes Wong, Hon Lun; White, Richard Allen; Visscher, Pieter T. The ISME Journal, Vol. 12, Issue 11 https://doi.org/10.1038/s41396-018-0208-8 journal July 2018
Farming the mitochondrial ancestor as a model of endosymbiotic establishment by natural selection Zachar, István; Szilágyi, András; Számadó, Szabolcs Proceedings of the National Academy of Sciences, Vol. 115, Issue 7 https://doi.org/10.1073/pnas.1718707115 journal January 2018
Phagocytosis-like cell engulfment by a planctomycete bacterium Shiratori, Takashi; Suzuki, Shigekatsu; Kakizawa, Yukako Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-13499-2 journal December 2019
The molecular foundations of zygosis Bloomfield, Gareth Cellular and Molecular Life Sciences, Vol. 77, Issue 2 https://doi.org/10.1007/s00018-019-03187-1 journal June 2019
Towards a systematic understanding of differences between archaeal and bacterial diversity: Systematic understanding of differences Spang, Anja; Offre, Pierre Environmental Microbiology Reports, Vol. 11, Issue 1 https://doi.org/10.1111/1758-2229.12701 journal November 2018
Data from: Asgard archaea illuminate the origin of eukaryotic cellular complexity Zaremba-Niedzwiedzka, Katarzyna; Caceres, Eva F.; Saw, Jimmy H. Dryad https://doi.org/10.5061/dryad.c471f dataset January 2018
Rpn11-mediated ubiquitin processing in an ancestral archaeal ubiquitination system Fuchs, Adrian C. D.; Maldoner, Lorena; Wojtynek, Matthias Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-05198-1 journal July 2018
Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei Montoliu-Nerin, Merce; Sánchez-García, Marisol; Bergin, Claudia Scientific Reports, Vol. 10, Issue 1 https://doi.org/10.1038/s41598-020-58025-3 journal January 2020
Prokaryotic cytoskeletons: protein filaments organizing small cells Wagstaff, James; Löwe, Jan Nature Reviews Microbiology, Vol. 16, Issue 4 https://doi.org/10.1038/nrmicro.2017.153 journal January 2018
Microbial Dark Matter Investigations: How Microbial Studies Transform Biological Knowledge and Empirically Sketch a Logic of Scientific Discovery Bernard, Guillaume; Pathmanathan, Jananan S.; Lannes, Romain Genome Biology and Evolution, Vol. 10, Issue 3 https://doi.org/10.1093/gbe/evy031 journal February 2018
Orpheovirus IHUMI-LCC2: A New Virus among the Giant Viruses Andreani, Julien; Khalil, Jacques Y. B.; Baptiste, Emeline Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.02643 journal January 2018
Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids Narrowe, Adrienne B.; Spang, Anja; Stairs, Courtney W. Genome Biology and Evolution, Vol. 10, Issue 9 https://doi.org/10.1093/gbe/evy154 journal August 2018
Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota McKay, Luke J.; Dlakić, Mensur; Fields, Matthew W. Nature Microbiology, Vol. 4, Issue 4 https://doi.org/10.1038/s41564-019-0362-4 journal March 2019
Eukaryote specific folds: Part of the whole Kauko, Anni; Lehto, Kirsi Proteins: Structure, Function, and Bioinformatics, Vol. 86, Issue 8 https://doi.org/10.1002/prot.25517 journal May 2018
Phylogenomics provides robust support for a two-domains tree of life Williams, Tom A.; Cox, Cymon J.; Foster, Peter G. Nature Ecology & Evolution, Vol. 4, Issue 1 https://doi.org/10.1038/s41559-019-1040-x journal December 2019
Optimal Growth Temperature and Intergenic Distances in Bacteria, Archaea, and Plastids of Rhodophytic Branch Lyubetsky, Vassily A.; Zverkov, Oleg A.; Rubanov, Lev I. BioMed Research International, Vol. 2020 https://doi.org/10.1155/2020/3465380 journal January 2020
Integrative modeling of gene and genome evolution roots the archaeal tree of life Williams, Tom A.; Szöllősi, Gergely J.; Spang, Anja Proceedings of the National Academy of Sciences, Vol. 114, Issue 23 https://doi.org/10.1073/pnas.1618463114 journal May 2017
The unexpected provenance of components in eukaryotic nucleotide-excision-repair and kinetoplast DNA-dynamics from bacterial mobile elements Krishnan, Arunkumar; Burroughs, A. Maxwell; Iyer, Lakshminarayan M. https://doi.org/10.1101/361121 posted_content July 2018
Targeted isolation and cultivation of uncultivated bacteria by reverse genomics Cross, Karissa L.; Campbell, James H.; Balachandran, Manasi Nature Biotechnology, Vol. 37, Issue 11 https://doi.org/10.1038/s41587-019-0260-6 journal September 2019
Failure to Recover Major Events of Gene Flux in Real Biological Data Due to Method Misapplication Kapust, Nils; Nelson-Sathi, Shijulal; Schönfeld, Barbara Genome Biology and Evolution, Vol. 10, Issue 5 https://doi.org/10.1093/gbe/evy080 journal April 2018
The Emergence of Life Camprubí, E.; de Leeuw, J. W.; House, C. H. Space Science Reviews, Vol. 215, Issue 8 https://doi.org/10.1007/s11214-019-0624-8 journal December 2019
The growing tree of Archaea: new perspectives on their diversity, evolution and ecology Adam, Panagiotis S.; Borrel, Guillaume; Brochier-Armanet, Céline The ISME Journal, Vol. 11, Issue 11 https://doi.org/10.1038/ismej.2017.122 journal August 2017
Pore timing: the evolutionary origins of the nucleus and nuclear pore complex Field, Mark C.; Rout, Michael P. F1000Research, Vol. 8 https://doi.org/10.12688/f1000research.16402.1 journal January 2019
Engineering yeast endosymbionts as a step toward the evolution of mitochondria Mehta, Angad P.; Supekova, Lubica; Chen, Jian-Hua Proceedings of the National Academy of Sciences, Vol. 115, Issue 46 https://doi.org/10.1073/pnas.1813143115 journal October 2018
The evolution of individuality revisited: The evolution of individuality revisited Radzvilavicius, Arunas L.; Blackstone, Neil W. Biological Reviews, Vol. 93, Issue 3 https://doi.org/10.1111/brv.12412 journal March 2018
Polyploidy in halophilic archaea: regulation, evolutionary advantages, and gene conversion Ludt, Katharina; Soppa, Jörg Biochemical Society Transactions, Vol. 47, Issue 3 https://doi.org/10.1042/bst20190256 journal June 2019
Extracellular membrane vesicles in the three domains of life and beyond Gill, Sukhvinder; Catchpole, Ryan; Forterre, Patrick FEMS Microbiology Reviews, Vol. 43, Issue 3 https://doi.org/10.1093/femsre/fuy042 journal November 2018
Evolutionary relationships between Archaea and eukaryotes Gribaldo, Simonetta; Brochier-Armanet, Céline Nature Ecology & Evolution, Vol. 4, Issue 1 https://doi.org/10.1038/s41559-019-1073-1 journal December 2019
Eukaryogenesis, a syntrophy affair López-García, Purificación; Moreira, David Nature Microbiology, Vol. 4, Issue 7 https://doi.org/10.1038/s41564-019-0495-5 journal June 2019
Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation Coureux, Pierre-Damien; Lazennec-Schurdevin, Christine; Bourcier, Sophie Communications Biology, Vol. 3, Issue 1 https://doi.org/10.1038/s42003-020-0780-0 journal February 2020
Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida Joo, Sunjoo; Wang, Ming Hsiu; Lui, Gary BMC Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s12915-018-0605-5 journal November 2018
Origin of the Eukaryotic Cell Lane, Nick Molecular Frontiers Journal, Vol. 01, Issue 02 https://doi.org/10.1142/s2529732517400120 journal December 2017
Labeling of prokaryotic mRNA in live cells using fluorescent in situ hybridization of transcript-annealing molecular beacons (FISH-TAMB) Harris, Rachel L.; Lau, Maggie C. Y.; van Heerden, Esta https://doi.org/10.1101/178368 posted_content August 2017
What is an archaeon and are the Archaea really unique? Harish, Ajith PeerJ, Vol. 6 https://doi.org/10.7717/peerj.5770 journal January 2018
ARF GTPases and their GEFs and GAPs: concepts and challenges Sztul, Elizabeth; Chen, Pei-Wen; Casanova, James E. Molecular Biology of the Cell, Vol. 30, Issue 11 https://doi.org/10.1091/mbc.e18-12-0820 journal May 2019
Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota Liu, Yang; Zhou, Zhichao; Pan, Jie The ISME Journal, Vol. 12, Issue 4 https://doi.org/10.1038/s41396-018-0060-x journal February 2018
Meet the relatives of our cellular ancestor Schleper, Christa; Sousa, Filipa L. Nature, Vol. 577, Issue 7791 https://doi.org/10.1038/d41586-020-00039-y journal January 2020
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes Alneberg, Johannes; Karlsson, Christofer M. G.; Divne, Anna-Maria Microbiome, Vol. 6, Issue 1 https://doi.org/10.1186/s40168-018-0550-0 journal September 2018
Marine Deep Biosphere Microbial Communities Assemble in Near-Surface Sediments in Aarhus Bay Petro, Caitlin; Zäncker, Birthe; Starnawski, Piotr Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.00758 journal April 2019
Formation of chimeric genes with essential functions at the origin of eukaryotes Méheust, Raphaël; Bhattacharya, Debashish; Pathmanathan, Jananan S. BMC Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s12915-018-0500-0 journal March 2018
Bacterial tail anchors can target to the mitochondrial outer membrane Bal, Güleycan Lutfullahoğlu; Keskin, Abdurrahman; Seferoğlu, Ayşe Bengisu https://doi.org/10.1101/111716 posted_content April 2017
A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells Erdmann, Susanne; Tschitschko, Bernhard; Zhong, Ling Nature Microbiology, Vol. 2, Issue 10 https://doi.org/10.1038/s41564-017-0009-2 journal August 2017
Investigating the Origins of Membrane Phospholipid Biosynthesis Genes Using Outgroup-Free Rooting Coleman, Gareth A.; Pancost, Richard D.; Williams, Tom A. Genome Biology and Evolution, Vol. 11, Issue 3 https://doi.org/10.1093/gbe/evz034 journal February 2019
A distinct abundant group of microbial rhodopsins discovered using functional metagenomics Pushkarev, Alina; Inoue, Keiichi; Larom, Shirley Nature, Vol. 558, Issue 7711 https://doi.org/10.1038/s41586-018-0225-9 journal June 2018
Proton gradients at the origin of life Lane, Nick BioEssays, Vol. 39, Issue 6 https://doi.org/10.1002/bies.201600217 journal May 2017
New Microbial Lineages Capable of Carbon Fixation and Nutrient Cycling in Deep-Sea Sediments of the Northern South China Sea Huang, Jiao-Mei; Baker, Brett J.; Li, Jiang-Tao Applied and Environmental Microbiology, Vol. 85, Issue 15 https://doi.org/10.1128/AEM.00523-19 journal May 2019
Symbiosis in the microbial world: from ecology to genome evolution Raina, Jean-Baptiste; Eme, Laura; Pollock, F. Joseph Biology Open, Vol. 7, Issue 2 https://doi.org/10.1242/bio.032524 journal February 2018
No genome is an island: toward a 21st century agenda for evolution Shapiro, James A. Annals of the New York Academy of Sciences, Vol. 1447, Issue 1 https://doi.org/10.1111/nyas.14044 journal March 2019
Cell polarity: having and making sense of direction—on the evolutionary significance of the primary cilium/centrosome organ in Metazoa Bornens, Michel Open Biology, Vol. 8, Issue 8 https://doi.org/10.1098/rsob.180052 journal August 2018
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database Rawlings, Neil D.; Barrett, Alan J.; Thomas, Paul D. Nucleic Acids Research, Vol. 46, Issue D1 https://doi.org/10.1093/nar/gkx1134 journal November 2017
A Complex Endomembrane System in the Archaeon Ignicoccus hospitalis Tapped by Nanoarchaeum equitans Heimerl, Thomas; Flechsler, Jennifer; Pickl, Carolin Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.01072 journal June 2017
Some Liked It Hot: A Hypothesis Regarding Establishment of the Proto-Mitochondrial Endosymbiont During Eukaryogenesis Dunn, Cory D. Journal of Molecular Evolution, Vol. 85, Issue 3-4 https://doi.org/10.1007/s00239-017-9809-5 journal September 2017
Intermediate filament protein evolution and protists Preisner, Harald; Habicht, Jörn; Garg, Sriram G. Cytoskeleton, Vol. 75, Issue 6 https://doi.org/10.1002/cm.21443 journal April 2018
In defence of the three-domains of life paradigm van der Gulik, P. T. S.; Hoff, W. D.; Speijer, D. BMC Evolutionary Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s12862-017-1059-z journal September 2017
Contributions of single-cell genomics to our understanding of planktonic marine archaea Santoro, A. E.; Kellom, M.; Laperriere, S. M. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 374, Issue 1786 https://doi.org/10.1098/rstb.2019.0096 journal October 2019
Marine deep biosphere microbial communities assemble in near-surface sediments in Aarhus Bay Petro, Caitlin; Zäncker, Birthe; Starnawski, Piotr https://doi.org/10.1101/557041 posted_content February 2019
Lynn Margulis and the endosymbiont hypothesis: 50 years later Gray, Michael W. Molecular Biology of the Cell, Vol. 28, Issue 10 https://doi.org/10.1091/mbc.e16-07-0509 journal May 2017
Asgard archaea do not close the debate about the universal tree of life topology Da Cunha, Violette; Gaia, Morgan; Nasir, Arshan PLOS Genetics, Vol. 14, Issue 3 https://doi.org/10.1371/journal.pgen.1007215 journal March 2018
Catalytic linkage between caspase activity and proteostasis in Archaea: Caspase activity and proteostasis in Archaea Seth-Pasricha, Mansha; Senn, Stefan; Sanman, Laura E. Environmental Microbiology, Vol. 21, Issue 1 https://doi.org/10.1111/1462-2920.14456 journal January 2019
Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis Yutin, Natalya; Bäckström, Disa; Ettema, Thijs J. G. Virology Journal, Vol. 15, Issue 1 https://doi.org/10.1186/s12985-018-0974-y journal April 2018
PhyMet 2 : a database and toolkit for phylogenetic and metabolic analyses of methanogens: PhyMet 2 : a comprehensive database and toolkit for methanogens Michał, Burdukiewicz; Gagat, Przemysław; Jabłoński, Sławomir Environmental Microbiology Reports, Vol. 10, Issue 3 https://doi.org/10.1111/1758-2229.12648 journal May 2018
Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences Deutekom, Eva S.; Vosseberg, Julian; van Dam, Teunis J. P. PLOS Computational Biology, Vol. 15, Issue 8 https://doi.org/10.1371/journal.pcbi.1007301 journal August 2019
The Deep(er) Roots of Eukaryotes and Akaryotes Harish, Ajith; Morrison, David A. https://doi.org/10.1101/2020.01.17.907717 posted_content January 2020
The Emergence of Life Parker, Barry Creation https://doi.org/10.1007/978-1-4899-3332-4_16 book January 1988
Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes Adam, Panagiotis S.; Borrel, Guillaume; Gribaldo, Simonetta Proceedings of the National Academy of Sciences, Vol. 115, Issue 6 https://doi.org/10.1073/pnas.1716667115 journal January 2018
Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes Ahlgren, Nathan A.; Fuchsman, Clara A.; Rocap, Gabrielle The ISME Journal, Vol. 13, Issue 3 https://doi.org/10.1038/s41396-018-0289-4 journal October 2018
Structure of the complete elongation complex of RNA polymerase II with basal factors Ehara, Haruhiko; Yokoyama, Takeshi; Shigematsu, Hideki Science, Vol. 357, Issue 6354 https://doi.org/10.1126/science.aan8552 journal September 2017
Archaeal cells share common size control with bacteria despite noisier growth and division Eun, Ye-Jin; Ho, Po-Yi; Kim, Minjeong Nature Microbiology, Vol. 3, Issue 2 https://doi.org/10.1038/s41564-017-0082-6 journal December 2017
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants Makarova, Kira S.; Wolf, Yuri I.; Iranzo, Jaime Nature Reviews Microbiology, Vol. 18, Issue 2 https://doi.org/10.1038/s41579-019-0299-x journal December 2019
Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche Bulzu, Paul-Adrian; Andrei, Adrian-Ştefan; Salcher, Michaela M. Nature Publishing Group https://doi.org/10.5167/uzh-183773 text January 2019
Structure and function of archaeal histones Henneman, Bram; van Emmerik, Clara; van Ingen, Hugo PLOS Genetics, Vol. 14, Issue 9 https://doi.org/10.1371/journal.pgen.1007582 journal September 2018
Timing the origin of eukaryotic cellular complexity with ancient duplications Vosseberg, Julian; van Hooff, Jolien J. E.; Marcet-Houben, Marina Nature Ecology & Evolution, Vol. 5, Issue 1 https://doi.org/10.1038/s41559-020-01320-z journal October 2020
Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes Zhang, Cui-Jing; Pan, Jie; Duan, Chang-Hai mSystems, Vol. 4, Issue 5 https://doi.org/10.1128/msystems.00442-19 journal September 2019
First evidence of the presence and activity of archaeal C3 group members in an Atlantic intertidal mudflat Lavergne, Céline; Hugoni, Mylène; Dupuy, Christine Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-30222-1 journal August 2018
Relative timing of mitochondrial endosymbiosis and the “pre-mitochondrial symbioses” hypothesis: RELATIVE TIMING OF MITOCHONDRIAL SYMBIOSIS Gabaldón, Toni IUBMB Life, Vol. 70, Issue 12 https://doi.org/10.1002/iub.1950 journal October 2018
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias Karst, Søren M.; Dueholm, Morten S.; McIlroy, Simon J. Nature Biotechnology, Vol. 36, Issue 2 https://doi.org/10.1038/nbt.4045 journal January 2018
Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism Spang, Anja; Stairs, Courtney W.; Dombrowski, Nina Nature Microbiology, Vol. 4, Issue 7 https://doi.org/10.1038/s41564-019-0406-9 journal April 2019
Perspectives on Cultivation Strategies of Archaea Sun, Yihua; Liu, Yang; Pan, Jie Microbial Ecology, Vol. 79, Issue 3 https://doi.org/10.1007/s00248-019-01422-7 journal August 2019
Archaeal Viruses from High-Temperature Environments Munson-McGee, Jacob; Snyder, Jamie; Young, Mark Genes, Vol. 9, Issue 3 https://doi.org/10.3390/genes9030128 journal February 2018
Start Codon Recognition in Eukaryotic and Archaeal Translation Initiation: A Common Structural Core Schmitt, Emmanuelle; Coureux, Pierre-Damien; Monestier, Auriane International Journal of Molecular Sciences, Vol. 20, Issue 4 https://doi.org/10.3390/ijms20040939 journal February 2019
Tree of motility – A proposed history of motility systems in the tree of life Miyata, Makoto; Robinson, Robert C.; Uyeda, Taro Q. P. Genes to Cells, Vol. 25, Issue 1 https://doi.org/10.1111/gtc.12737 journal January 2020
Mechanisms of gene flow in archaea Wagner, Alexander; Whitaker, Rachel J.; Krause, David J. Nature Reviews Microbiology, Vol. 15, Issue 8 https://doi.org/10.1038/nrmicro.2017.41 journal May 2017
Inferring the Evolutionary History of Your Favorite Protein: A Guide for Molecular Biologists Hooff, Jolien J. E.; Tromer, Eelco; Dam, Teunis J. P. BioEssays, Vol. 41, Issue 5 https://doi.org/10.1002/bies.201900006 journal April 2019
Characterization of mitochondrial proteomes of nonbilaterian animals: MITOCHONDRIAL PROTEOMES IN NONBILATERIAN ANIMALS Muthye, Viraj; Lavrov, Dennis V. IUBMB Life, Vol. 70, Issue 12 https://doi.org/10.1002/iub.1961 journal November 2018
Two or three domains: a new view of tree of life in the genomics era Zhou, Zhichao; Liu, Yang; Li, Meng Applied Microbiology and Biotechnology, Vol. 102, Issue 7 https://doi.org/10.1007/s00253-018-8831-x journal February 2018
Integrated genomic and fossil evidence illuminates life’s early evolution and eukaryote origin Betts, Holly C.; Puttick, Mark N.; Clark, James W. Nature Ecology & Evolution, Vol. 2, Issue 10 https://doi.org/10.1038/s41559-018-0644-x journal August 2018
Functional Innovation in the Evolution of the Calcium-Dependent System of the Eukaryotic Endoplasmic Reticulum Schäffer, Daniel E.; Iyer, Lakshminarayan M.; Burroughs, A. Maxwell Frontiers in Genetics, Vol. 11 https://doi.org/10.3389/fgene.2020.00034 journal February 2020
Evolution of polymer formation within the actin superfamily Stoddard, Patrick R.; Williams, Tom A.; Garner, Ethan Molecular Biology of the Cell, Vol. 28, Issue 19 https://doi.org/10.1091/mbc.e15-11-0778 journal September 2017
Gene-based predictive models of trophic modes suggest Asgard archaea are not phagocytotic Burns, John A.; Pittis, Alexandros A.; Kim, Eunsoo Nature Ecology & Evolution, Vol. 2, Issue 4 https://doi.org/10.1038/s41559-018-0477-7 journal February 2018
Genomes of Asgard archaea encode profilins that regulate actin Akıl, Caner; Robinson, Robert C. Nature, Vol. 562, Issue 7727 https://doi.org/10.1038/s41586-018-0548-6 journal October 2018
The cutting edge of archaeal transcription Fouqueau, Thomas; Blombach, Fabian; Cackett, Gwenny Emerging Topics in Life Sciences, Vol. 2, Issue 4 https://doi.org/10.1042/etls20180014 journal November 2018
Archaeal imaging: leading the hunt for new discoveries Bisson-Filho, Alexandre W.; Zheng, Jenny; Garner, Ethan Molecular Biology of the Cell, Vol. 29, Issue 14 https://doi.org/10.1091/mbc.e17-10-0603 journal July 2018
The evolution of the Puf superfamily of proteins across the tree of eukaryotes Najdrová, Vladimíra; Stairs, Courtney W.; Vinopalová, Martina BMC Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s12915-020-00814-3 journal June 2020
The E. coli MinCDE system in the regulation of protein patterns and gradients Ramm, Beatrice; Heermann, Tamara; Schwille, Petra Cellular and Molecular Life Sciences, Vol. 76, Issue 21 https://doi.org/10.1007/s00018-019-03218-x journal July 2019
Breath-giving cooperation: critical review of origin of mitochondria hypotheses: Major unanswered questions point to the importance of early ecology Zachar, István; Szathmáry, Eörs Biology Direct, Vol. 12, Issue 1 https://doi.org/10.1186/s13062-017-0190-5 journal August 2017
Asgard archaea are diverse, ubiquitous, and transcriptionally active microbes Cai, Mingwei; Liu, Yang; Zhou, Zhichao https://doi.org/10.1101/374165 posted_content July 2018
Structure of histone-based chromatin in Archaea Mattiroli, Francesca; Bhattacharyya, Sudipta; Dyer, Pamela N. Science, Vol. 357, Issue 6351 https://doi.org/10.1126/science.aaj1849 journal August 2017
The deep(er) roots of Eukaryotes and Akaryotes Harish, Ajith; Morrison, David F1000Research, Vol. 9 https://doi.org/10.12688/f1000research.22338.2 journal January 2020
A versatile cis-acting element reporter system to study the function, maturation and stability of ribosomal RNA mutants in archaea Jüttner, Michael; Weiß, Matthias; Ostheimer, Nina Nucleic Acids Research, Vol. 48, Issue 4 https://doi.org/10.1093/nar/gkz1156 journal December 2019
The deep(er) roots of Eukaryotes and Akaryotes Harish, Ajith; Morrison, David F1000Research, Vol. 9 https://doi.org/10.12688/f1000research.22338.1 journal January 2020
Archaeal cell biology: diverse functions of tubulin-like cytoskeletal proteins at the cell envelope Liao, Yan; Ithurbide, Solenne; de Silva, Roshali T. Emerging Topics in Life Sciences, Vol. 2, Issue 4 https://doi.org/10.1042/etls20180026 journal December 2018
Too Much Eukaryote LGT Martin, William F. BioEssays, Vol. 39, Issue 12 https://doi.org/10.1002/bies.201700115 journal October 2017
Why the Lipid Divide? Membrane Proteins as Drivers of the Split between the Lipids of the Three Domains of Life Sojo, Victor BioEssays, Vol. 41, Issue 5 https://doi.org/10.1002/bies.201800251 journal April 2019
Origin and evolution of fungal HECT ubiquitin ligases Marín, Ignacio Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-24914-x journal April 2018
Comparative analyses of whole-genome protein sequences from multiple organisms Yokono, Makio; Satoh, Soichirou; Tanaka, Ayumi Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-25090-8 journal May 2018
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Zhu, Qiyun; Mai, Uyen; Pfeiffer, Wayne Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-13443-4 journal December 2019
Microfluidic long DNA sample preparation from cells Agrawal, Paridhi; Dorfman, Kevin D. Lab on a Chip, Vol. 19, Issue 2 https://doi.org/10.1039/c8lc01163j journal January 2019
The last universal common ancestor between ancient Earth chemistry and the onset of genetics Weiss, Madeline C.; Preiner, Martina; Xavier, Joana C. PLOS Genetics, Vol. 14, Issue 8 https://doi.org/10.1371/journal.pgen.1007518 journal August 2018
Prototypic SNARE Proteins Are Encoded in the Genomes of Heimdallarchaeota, Potentially Bridging the Gap between the Prokaryotes and Eukaryotes Neveu, Emilie; Khalifeh, Dany; Salamin, Nicolas Current Biology, Vol. 30, Issue 13 https://doi.org/10.1016/j.cub.2020.04.060 journal July 2020
The Prodigal Compound: Return of Ribosyl 1,5-Bisphosphate as an Important Player in Metabolism Hove-Jensen, Bjarne; Brodersen, Ditlev E.; Manav, M. Cemre Microbiology and Molecular Biology Reviews, Vol. 83, Issue 1 https://doi.org/10.1128/mmbr.00040-18 journal December 2018
Visualization of Loki- and Heimdallarchaeia (Asgardarchaeota) by fluorescence in situ hybridization and catalyzed reporter deposition (CARD-FISH) Salcher, Michaela M.; Andrei, Adrian-Ştefan; Bulzu, Paul-Adrian https://doi.org/10.1101/580431 posted_content March 2019
Linking metagenomics to aquatic microbial ecology and biogeochemical cycles Grossart, Hans‐Peter; Massana, Ramon; McMahon, Katherine D. Limnology and Oceanography, Vol. 65, Issue S1 https://doi.org/10.1002/lno.11382 journal January 2020
Genomic diversity, lifestyles and evolutionary origins of DPANN archaea Dombrowski, Nina; Lee, Jun-Hoe; Williams, Tom A. FEMS Microbiology Letters, Vol. 366, Issue 2 https://doi.org/10.1093/femsle/fnz008 journal January 2019
A journey through the evolutionary diversification of archaeal Lsm and Hfq proteins* Reichelt, Robert; Grohmann, Dina; Willkomm, Sarah Emerging Topics in Life Sciences, Vol. 2, Issue 4 https://doi.org/10.1042/etls20180034 journal December 2018
Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery Vosseberg, Julian; Snel, Berend Biology Direct, Vol. 12, Issue 1 https://doi.org/10.1186/s13062-017-0201-6 journal December 2017
Concepts of the last eukaryotic common ancestor O’Malley, Maureen A.; Leger, Michelle M.; Wideman, Jeremy G. Nature Ecology & Evolution, Vol. 3, Issue 3 https://doi.org/10.1038/s41559-019-0796-3 journal February 2019
Organohalide respiratory chains: composition, topology and key enzymes Schubert, Torsten; Adrian, Lorenz; Sawers, R. Gary FEMS Microbiology Ecology, Vol. 94, Issue 4 https://doi.org/10.1093/femsec/fiy035 journal March 2018
Evolutionary cell biology traces the rise of the exomer complex in Fungi from an ancient eukaryotic component Ramirez-Macias, Inmaculada; Barlow, Lael D.; Anton, Carlos Nature Publishing Group https://doi.org/10.5451/unibas-ep65035 text January 2018
IS982 and kin: new insights into an old IS family Fayad, Nancy; Kallassy Awad, Mireille; Mahillon, Jacques Mobile DNA, Vol. 11, Issue 1 https://doi.org/10.1186/s13100-020-00221-z journal July 2020
Modifying Post‐Translational Modifications: A Strategy Used by Archaea for Adapting to Changing Environments?: Manipulating the Extent, Position, or Content of Post‐Translational Modifications May Help Archaea Adapt to Environmental Change Eichler, Jerry BioEssays, Vol. 42, Issue 3 https://doi.org/10.1002/bies.201900207 journal March 2020
Count does not recover major events of gene flux in real biological data Kapust, Nils; Nelson-Sathi, Shijulal; Schönfeld, Barbara https://doi.org/10.1101/246272 posted_content January 2018
Uncovering the Uncultivated Majority in Antarctic Soils: Toward a Synergistic Approach Lambrechts, Sam; Willems, Anne; Tahon, Guillaume Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.00242 journal February 2019
Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov. Hahn, Martin W.; Schmidt, Johanna; Asiyo, Grace Ssanyu International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 12 https://doi.org/10.1099/ijsem.0.002421 journal December 2017
Asgard archaea are the closest prokaryotic relatives of eukaryotes Spang, Anja; Eme, Laura; Saw, Jimmy H. PLOS Genetics, Vol. 14, Issue 3 https://doi.org/10.1371/journal.pgen.1007080 journal March 2018
Eukaryotic Pangenomes Richard, Guy-Franck The Pangenome https://doi.org/10.1007/978-3-030-38281-0_12 book January 2020
Physiology, phylogeny, early evolution, and GAPDH Martin, William F.; Cerff, Rüdiger Protoplasma, Vol. 254, Issue 5 https://doi.org/10.1007/s00709-017-1095-y journal March 2017
The K296-D320 region of recombinant levansucrase BA-SacB can affect the sensitivity of Escherichia coli host to sucrose Gao, Song; Jiang, Bo; Zhu, Song Annals of Microbiology, Vol. 69, Issue 11 https://doi.org/10.1007/s13213-019-01496-1 journal July 2019
Symbiogenesis: Beyond the endosymbiosis theory? Aanen, Duur K.; Eggleton, Paul Journal of Theoretical Biology, Vol. 434 https://doi.org/10.1016/j.jtbi.2017.08.001 journal December 2017
Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments Dong, Xiyang; Greening, Chris; Rattray, Jayne E. Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-09747-0 journal April 2019
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface Probst, Alexander J.; Ladd, Bethany; Jarett, Jessica K. Nature Microbiology, Vol. 3, Issue 3 https://doi.org/10.1038/s41564-017-0098-y journal January 2018
What is an archaeon and are the Archaea really unique? Harish, Ajith PeerJ https://doi.org/10.1101/256263 posted_content March 2018
Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida Joo, Sunjoo; Wang, Ming Hsiu; Lui, Gary https://doi.org/10.1101/389700 journal August 2018
Functional innovation in the evolution of the calcium-dependent system of the eukaryotic endoplasmic reticulum Schäffer, Daniel E.; Iyer, Lakshminarayan M.; Burroughs, A. Maxwell https://doi.org/10.1101/716472 posted_content January 2020
Radiation of nitrogen‐metabolizing enzymes across the tree of life tracks environmental transitions in Earth history Parsons, Chris; Stüeken, Eva E.; Rosen, Caleb J. Geobiology, Vol. 19, Issue 1 https://doi.org/10.1111/gbi.12419 journal October 2020
An Important Role for Purifying Selection in Archaeal Genome Evolution Lyu, Zhe; Li, Zhi-Gang; He, Fei mSystems, Vol. 2, Issue 5 https://doi.org/10.1128/msystems.00112-17 journal October 2017
Design of targeted primers based on 16S rRNA sequences in meta-transcriptomic datasets and identification of a novel taxonomic group in the Asgard archaea Zhang, Ru-Yi; Zou, Bin; Yan, Yong-Wei BMC Microbiology, Vol. 20, Issue 1 https://doi.org/10.1186/s12866-020-1707-0 journal February 2020
Correction to: Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archaeplastida Joo, Sunjoo; Wang, Ming H.; Lui, Gary BioMed Central https://doi.org/10.14288/1.0388234 text January 2020
‘Parabiotic Evolution’: From Stochasticity in Geochemical and Subsequent Processes to Genes, Genomes and Modular Cells Egel, Richard https://doi.org/10.20944/preprints201710.0153.v1 preprint October 2017
ESCRT Machinery Mediates Cytokinetic Abscission in the Unicellular Red Alga Cyanidioschyzon merolae Yagisawa, Fumi; Fujiwara, Takayuki; Takemura, Tokiaki Frontiers in Cell and Developmental Biology, Vol. 8 https://doi.org/10.3389/fcell.2020.00169 journal April 2020
A Metagenomic Approach to Cyanobacterial Genomics Alvarenga, Danillo O.; Fiore, Marli F.; Varani, Alessandro M. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00809 journal May 2017
Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs Becraft, Eric D.; Dodsworth, Jeremy A.; Murugapiran, Senthil K. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.02082 journal October 2017
Do Viruses Exchange Genes across Superkingdoms of Life? Malik, Shahana S.; Azem-e-Zahra, Syeda; Kim, Kyung Mo Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.02110 journal October 2017
Dividing the Archaeal Way: The Ancient Cdv Cell-Division Machinery Caspi, Yaron; Dekker, Cees Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.00174 journal March 2018
A Briefly Argued Case That Asgard Archaea Are Part of the Eukaryote Tree Fournier, Gregory P.; Poole, Anthony M. Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.01896 journal August 2018
Microbial Synthesis and Transformation of Inorganic and Organic Chlorine Compounds Atashgahi, Siavash; Liebensteiner, Martin G.; Janssen, Dick B. Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.03079 journal December 2018
Commentary: Manifold Routes to a Nucleus Jogler, Christian; Wiegand, Sandra; Devos, Damien P. Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01198 journal May 2019
Phosphorylation of the Archaeal Holliday Junction Resolvase Hjc Inhibits Its Catalytic Activity and Facilitates DNA Repair in Sulfolobus islandicus REY15A Huang, Qihong; Mayaka, Joseph Badys; Zhong, Qing Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01214 journal May 2019
Eukaryotes Are a Holophyletic Group of Polyphyletic Origin Skejo, Josip; Franjević, Damjan Frontiers in Microbiology, Vol. 11 https://doi.org/10.3389/fmicb.2020.01380 journal July 2020
Recent Advances in Archaeal Translation Initiation Schmitt, Emmanuelle; Coureux, Pierre-Damien; Kazan, Ramy Frontiers in Microbiology, Vol. 11 https://doi.org/10.3389/fmicb.2020.584152 journal September 2020
Messages From the Past: New Insights in Plant Lectin Evolution Van Holle, Sofie; Van Damme, Els J. M. Frontiers in Plant Science, Vol. 10 https://doi.org/10.3389/fpls.2019.00036 journal January 2019
Small Genomes and Big Data: Adaptation of Plastid Genomics to the High-Throughput Era No authors listed Biomolecules, Vol. 9, Issue 8 https://doi.org/10.3390/biom9080299 journal July 2019
The Origin and Evolution of Release Factors: Implications for Translation Termination, Ribosome Rescue, and Quality Control Pathways Burroughs, A. Maxwell; Aravind, L. International Journal of Molecular Sciences, Vol. 20, Issue 8 https://doi.org/10.3390/ijms20081981 journal April 2019
Cryosphere and Psychrophiles: Insights into a Cold Origin of Life? Feller, Georges Life, Vol. 7, Issue 2 https://doi.org/10.3390/life7020025 journal June 2017
The Vulnerability of Microbial Ecosystems in A Changing Climate: Potential Impact in Shark Bay No authors listed Life, Vol. 9, Issue 3 https://doi.org/10.3390/life9030071 journal September 2019
Insights into the evolutionary conserved regulation of Rio ATPase activity Knüppel, Robert; Christensen, Regitse H.; Gray, Fiona C. Universität Regensburg https://doi.org/10.5283/epub.37297 text January 2017
Additional file 3 of Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost Liang, Renxing; Li, Zhou; Vetter, Maggie C. Y. Lau figshare https://doi.org/10.6084/m9.figshare.14608591 dataset January 2021
Additional file 4 of Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost Liang, Renxing; Li, Zhou; Vetter, Maggie C. Y. Lau figshare https://doi.org/10.6084/m9.figshare.14608594 dataset January 2021
Additional file 5 of Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost Liang, Renxing; Li, Zhou; Vetter, Maggie C. Y. Lau figshare https://doi.org/10.6084/m9.figshare.14608597 dataset January 2021
Additional file 7 of Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost Liang, Renxing; Li, Zhou; Vetter, Maggie C. Y. Lau figshare https://doi.org/10.6084/m9.figshare.14608603.v1 dataset January 2021
Additional file 8 of Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost Liang, Renxing; Li, Zhou; Vetter, Maggie C. Y. Lau figshare https://doi.org/10.6084/m9.figshare.14608606 dataset January 2021
Additional file 2 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775424.v1 dataset January 2021
Additional file 3 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775427.v1 dataset January 2021
Additional file 4 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775430.v1 dataset January 2021
Additional file 5 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775433 dataset January 2021
Additional file 6 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775436 dataset January 2021
Additional file 7 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775439.v1 dataset January 2021
Additional file 8 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution Shen, Liang; Liu, Yongqin; Allen, Michelle A. figshare https://doi.org/10.6084/m9.figshare.14775442 dataset January 2021
Additional file 1 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota Xie, Yuan-Guo; Luo, Zhen-Hao; Fang, Bao-Zhu figshare https://doi.org/10.6084/m9.figshare.21340502 dataset January 2022
Additional file 4 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota Xie, Yuan-Guo; Luo, Zhen-Hao; Fang, Bao-Zhu figshare https://doi.org/10.6084/m9.figshare.21340511.v1 dataset January 2022

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