DelayedMatrixStats (original) (raw)
This is the released version of DelayedMatrixStats; for the devel version, seeDelayedMatrixStats.
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
Bioconductor version: Release (3.20)
A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.
Author: Peter Hickey [aut, cre] , Hervé Pagès [ctb], Aaron Lun [ctb]
Maintainer: Peter Hickey <peter.hickey at gmail.com>
Citation (from within R, enter citation("DelayedMatrixStats")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DelayedMatrixStats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DelayedMatrixStats")
Overview of DelayedMatrixStats | HTML | R Script |
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Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataRepresentation, Infrastructure, Software |
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Version | 1.28.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | MIT + file LICENSE |
Depends | MatrixGenerics(>= 1.15.1), DelayedArray(>= 0.31.7) |
Imports | methods, sparseMatrixStats(>= 1.13.2), Matrix (>= 1.5-0), S4Vectors(>= 0.17.5), IRanges(>= 2.25.10), SparseArray(>= 1.5.19) |
System Requirements | |
URL | https://github.com/PeteHaitch/DelayedMatrixStats |
Bug Reports | https://github.com/PeteHaitch/DelayedMatrixStats/issues |
See More
Suggests | testthat, knitr, rmarkdown, BiocStyle, microbenchmark, profmem, HDF5Array, matrixStats (>= 1.0.0) |
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Linking To | |
Enhances | |
Depends On Me | |
Imports Me | AUCell, batchelor, biscuiteer, bsseq, Cepo, dmrseq, dreamlet, DropletUtils, FRASER, glmGamPoi, GSVA, lemur, methrix, methylSig, mia, minfi, mumosa, NetActivity, PCAtools, recountmethylation, SCArray, scFeatures, scMerge, scone, singleCellTK, SingleR, sparrow, SpliceWiz, weitrix, celldex |
Suggests Me | condiments, DelayedArray, EWCE, HDF5Array, lute, MatrixGenerics, mbkmeans, ScaledMatrix, scater, scPCA, scran, scuttle, slingshot, tradeSeq, TrajectoryUtils, SpatialDDLS |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | DelayedMatrixStats_1.28.0.tar.gz |
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Windows Binary (x86_64) | DelayedMatrixStats_1.28.0.zip |
macOS Binary (x86_64) | DelayedMatrixStats_1.28.0.tgz |
macOS Binary (arm64) | DelayedMatrixStats_1.28.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DelayedMatrixStats |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DelayedMatrixStats |
Bioc Package Browser | https://code.bioconductor.org/browse/DelayedMatrixStats/ |
Package Short Url | https://bioconductor.org/packages/DelayedMatrixStats/ |
Package Downloads Report | Download Stats |