PGRdup: Discover Probable Duplicates in Plant Genetic Resources Collections (original) (raw)

Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.

Version:

0.2.3.9

Depends:

R (≥ 3.0.2)

Imports:

data.table (≥ 1.9.3), igraph, stringdist (≥ 0.9.4), stringi, ggplot2, grid, gridExtra, methods, utils, stats

Suggests:

diagram, wordcloud, microbenchmark, XML, httr, RCurl, knitr, rmarkdown, pander

Published:

2023-08-31

DOI:

10.32614/CRAN.package.PGRdup

Author:

J. Aravind ORCID iD [aut, cre], J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph] (url: www.nbpgr.ernet.in), Maurice Aubrey [ctb] (Double Metaphone), Kevin Atkinson [ctb] (Double Metaphone), Lawrence Philips [ctb] (Double Metaphone)

Maintainer:

J. Aravind <j.aravind at icar.gov.in>

BugReports:

https://github.com/aravind-j/PGRdup/issues

License:

GPL-2 | GPL-3

Copyright:

2014-2023, ICAR-NBPGR

URL:

https://cran.r-project.org/package=PGRdup,https://github.com/aravind-j/PGRdup,https://doi.org/10.5281/zenodo.841963,https://aravind-j.github.io/PGRdup/,https://www.rdocumentation.org/packages/PGRdup

NeedsCompilation:

yes

Citation:

PGRdup citation info

Materials:

README NEWS

CRAN checks:

PGRdup results